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Article

Makowska, Zuzanna and Boldanova, Tujana and Adametz, David and Quagliata, Luca and Vogt, Julia E. and Dill, Michael T. and Matter, Mathias S. and Roth, Volker and Terracciano, Luigi and Heim, Markus H.. (2016) Gene expression analysis of biopsy samples reveals critical limitations of transcriptome-based molecular classifications of hepatocellular carcinoma. The Journal of Pathology : Clinical Research , 2 (2). pp. 80-92.

Vogt, JuliaE. and Kloft, Marius and Stark, Stefan and Raman, SudhirS. and Prabhakaran, Sandhya and Roth, Volker and Ratsch, Gunnar. (2015) Probabilistic clustering of time-evolving distance data. Machine learning, Vol. 100, H. 2-3. pp. 635-654.

Dill, Michael T. and Makowska, Zuzanna and Trincucci, Gaia and Gruber, Andreas J. and Vogt, Julia E. and Filipowicz, Magdalena and Calabrese, Diego and Krol, Ilona and Lau, Daryl T. and Terracciano, Luigi and van Nimwegen, Erik and Roth, Volker and Heim, Markus H.. (2014) Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation. Journal of Clinical Investigation, Vol. 124, H. 4. pp. 1568-1581.

Bousleiman, Habib and Zimmermann, Ronan and Ahmed, Shaheen and Hardmeier, Martin and Hatz, Florian and Schindler, Christian and Roth, Volker and Gschwandtner, Ute and Fuhr, Peter. (2014) Power spectra for screening parkinsonian patients for mild cognitive impairment. Annals of clinical and translational neurology, Vol. 1, H. 11. pp. 884-890.

Giallonardo, Francesca Di and Töpfer, Armin and Rey, Melanie and Prabhakaran, Sandhya and Duport, Yannick and Leemann, Christine and Schmutz, Stefan and Campbell, Nottania K. and Joos, Beda and Lecca, Maria Rita and Patrignani, Andrea and Däumer, Martin and Beisel, Christian and Rusert, Peter and Trkola, Alexandra and Günthard, Huldrych F. and Roth, Volker and Beerenwinkel, Niko and Metzner, Karin J.. (2014) Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42 (14). e115.

Prabhakaran, Sandhya and Rey, Melanie and Zagordi, Osvaldo and Beerenwinkel, Niko and Roth, Volker. (2014) HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model. IEEE/ACM transactions on computational biology and bioinformatics, Vol. 1, H. 1. pp. 182-191.

Wigger, Leonore and Vogt, Julia E. and Roth, Volker. (2013) Malaria haplotype frequency estimation. Statistics in medicine, Vol. 32, H. 21. pp. 3737-3751.

Töpfer, Armin and Zagordi, Osvaldo and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2013) Probabilistic inference of viral quasispecies subject to recombination. Journal of computational biology, Vol. 20, H. 2. pp. 113-123.

Prabhakaran, Sandhya and Adametz, David and Metzner, KarinJ. and Boehm, Alexander and Roth, Volker. (2013) Recovering networks from distance data. Machine learning, Vol. 92, H. 2-3. pp. 251-283.

Meyer, Stefanie and Fuchs, Thomas J. and Bosserhoff, Anja K. and Hofstädter, Ferdinand and Pauer, Armin and Roth, Volker and Buhmann, Joachim M. and Moll, Ingrid and Anagnostou, Nikos and Brandner, Johanna M. and Ikenberg, Kristian and Moch, Holger and Landthaler, Michael and Vogt, Thomas and Wild, Peter J.. (2012) A seven-marker signature and clinical outcome in malignant melanoma : a large-scale tissue-microarray study with two independent patient cohorts. PLoS one, Vol. 7, H. 6 , e38222.

Beerenwinkel, Niko and Günthard, Huldrych F. and Roth, Volker and Metzner, Karin J.. (2012) Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in microbiology, Vol. 3, H. 329.

Prabhakaran, Sandhya and Metzner, Karin J. and Boehm, Alexander and Roth, Volker. (2012) Recovering Networks from Distance Data. Journal of machine learning research, Vol. 25. pp. 349-364.

Grussenmeyer, T. and Meili-Butz, S. and Roth, V. and Dieterle, T. and Brink, M. and Winkler, B. and Matt, P. and Carrel, T. P. and Eckstein, F. S. and Lefkovits, I. and Grapow, M. T.. (2011) Proteome analysis in cardiovascular pathophysiology using Dahl rat model. Journal of proteomics, Vol. 74, H. 5. pp. 672-682.

Boehm, A.. (2010) Second Messenger-Mediated Adjustment of Bacterial Swimming Velocity. Cell, Vol. 141, H. 1. pp. 107-116.

Zagordi, Osvaldo and Geyrhofer, Lukas and Roth, Volker and Beerenwinkel, Niko. (2010) Deep sequencing of a genetically heterogeneous sample : local haplotype reconstruction and read error correction. Journal of computational biology, Vol. 17, H. 3. pp. 417-428.

Raman, Sudhir and Fuchs, Thomas and Wild, Peter and Dahl, Edgar and Buhmann, Joachim and Roth, Volker. (2010) Infinite mixture-of-experts model for sparse survival regression with application to breast cancer. BMC Bioinformatics, Vol. 11, Suppl 8 , S8.

Dill, M. T. and Duong, F. H. and Vogt, J. E. and Bibert, S. and Bochud, P. Y. and Terracciano, L. and Papassotiropoulos, A. and Roth, V. and Heim, M. H.. (2010) Interferon-Induced Gene Expression Is a Stronger Predictor of Treatment Response than IL28B Genotype in Patients with Hepatitis C. Gastroenterology, Vol. 140, H. 3 , S. 1021–1031.

Wild, Peter J. and Fuchs, Thomas and Stoehr, Robert and Zimmermann, Dieter and Frigerio, Simona and Padberg, Barbara and Steiner, Inbal and Zwarthoff, Ellen C. and Burger, Maximilian and Denzinger, Stefan and Hofstaedter, Ferdinand and Kristiansen, Glen and Hermanns, Thomas and Seifert, Hans-Helge and Provenzano, Maurizio and Sulser, Tullio and Roth, Volker and Buhmann, Joachim M. and Moch, Holger and Hartmann, Arndt. (2009) Detection of urothelial bladder cancer cells in voided urine can be improved by a combination of cytology and standardized microsatellite analysis. Cancer epidemiology biomarkers & prevention, Vol. 18, H. 6. pp. 1798-1806.

Bernd Fischer, and Volker Roth, and Joachim M. Buhmann, . (2009) Adaptive bandwidth selection for biomarker discovery in mass spectrometry. Artificial Intelligence in Medicine, Vol. 45, H. 2-3. pp. 207-214.

Book Section

Kaufmann, Dinu and Keller, Sebastian and Roth, Volker. (2015) Copula Archetypal Analysis. In: Pattern Recognition. pp. 117-128.

Adametz, David and Rey, Melanie and Roth, Volker. (2014) Information Bottleneck for Pathway-Centric Gene Expression Analysis. In: Pattern recognition: 36th German Conference. Cham, pp. 81-91.

Adametz, David and Roth, Volker. (2014) Distance-based network recovery under feature correlation. In: Advances in neural information processing systems, 27. Cambridge (Mass.), pp. 775-783.

Conference or Workshop Item

Egger, Bernhard and Kaufmann, Dinu and Schönborn, Sandro and Roth, Volker and Vetter, Thomas. (2016) Copula Eigenfaces - Semiparametric Principal Component Analysis for Facial Appearance Modeling. In: Proceedings of the 11th Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2016). Cham, pp. 50-58.

Kaufmann, Dinu and Parbhoo, Sonali and Wieczorek, Aleksander and Keller, Sebastian and Adametz, David and Roth, Volker . (2016) Bayesian Markov Blanket Estimation. In: Proceedings of the 19th International Conference on Artificial Intelligence and Statistics, AISTATS 2016, Cadiz, Spain, May 9-11, 2016, 51. pp. 333-341.

Rey, Melani and Roth, Volker and Fuchs, Thomas. (2014) Sparse meta-Gaussian information bottleneck. In: Proceedings of the 31st International Conference on Machine Learning (ICML 2014). Red Hook, NY, pp. 910-918.

Rey, Melanie Rey and Roth, Volker. (2013) Meta-Gaussian information bottleneck. In: Advances in neural information processing systems, 25. Cambridge (Mass.), pp. 1925-1933.

Raman, Sudhir and Roth, Volker. (2012) Sparse point estimation for Bayesian regression via simulated annealing. In: Pattern recognition : joint 34th DAGM and 36th OAGM Symposium. Springer, pp. 317-326.

Melanie, Rey and Roth, Volker. (2012) Copula mixture model for eependency-seeking clustering. In: 29th International Conference on Machine Learning (ICML 2012), 8 S.. Edinburgh.

Vogt, Julia and Roth, Volker. (2012) A complete analysis of the l_1,p Group-Lasso. In: 29th International Conference on Machine Learning (ICML 2012), 8 S.. Edinburgh.

Zagordi, Osvaldo and Töpfer, Armin and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2012) Probabilistic inference of viral quasispecies subject to recombination. In: Research in Computational Molecular Biology. Berlin, pp. 342-354.

Prabhakaran, Sandhya and Raman, Sudhir and Vogt, Julia and Roth, Volker. (2012) Automatic model selection in archetype analysis. In: Pattern recognition : joint 34th DAGM and 36th OAGM Symposium. Springer, pp. 458-467.

Adametz, David and Roth, Volker. (2011) Bayesian Partitioning of Large-Scale Distance Data. In: Advances in Neural Information Processing Systems 24, 9 S.. Red Hook, NY.

Vogt, J. E. and Prabhakaran, S. and Fuchs, T. J. and Roth, V.. (2010) The translation-invariant wishart-dirichlet process for clustering distance data. In: ICML 2010: Proceedings of the 27th international conference on Machine Learning.. International Machine Learning Society, pp. 1111-1118.

Julia E. Vogt, and Volker Roth, . (2010) The Group-Lasso: ℓ1, ∞  Regularization versus ℓ1,2 Regularization. In: Pattern Recognition : 32nd DAGM Symposium, Darmstadt, Germany, September 22-24, 2010. Proceedings. Berlin, Heidelberg, pp. 252-261.

Peter J. Schüffler, and Thomas J. Fuchs, and Cheng Soon Ong, and Volker Roth, and Joachim M. Buhmann, . (2010) Computational TMA analysis and cell nucleus classification of renal cell carcinoma. In: Pattern Recognition : 32nd DAGM Symposium, Darmstadt, Germany, September 22-24, 2010. Proceedings. Berlin, pp. 202-211.

Osvaldo Zagordi, and Lukas Geyrhofer, and Volker Roth, and Niko Beerenwinkel, . (2009) Deep Sequencing of a Genetically Heterogeneous Sample : Local Haplotype Reconstruction and Read Error Correction. In: Research in Computational Molecular Biology. Berlin, Heidelberg, pp. 271-284.

Sudhir Raman, and Volker Roth, . (2009) Sparse Bayesian Regression for Grouped Variables in Generalized Linear Models. In: Pattern Recognition : 31st DAGM Symposium, Jena, Germany, September 9-11, 2009. Proceedings. Berlin, Heidelberg, pp. 242-251.

Sudhir Raman, and Thomas J. Fuchs, and Peter J. Wild, and Edgar Dahl, and Volker Roth, . (2009) The Bayesian group-Lasso for analyzing contingency tables. In: Proceedings of the 26 th International Conference on Machine Learning : Montréal, Canada, June 14 - 18, 2009. Madison, pp. 881-888.