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Carlucci, James G. and Blevins Peratikos, Meridith and Kipp, Aaron M. and Lindegren, Mary L. and Du, Quy T. and Renner, Lorna and Reubenson, Gary and Ssali, John and Yotebieng, Marcel and Mandalakas, Anna M. and Davies, Mary-Ann and Ballif, Marie and Fenner, Lukas and Pettit, April C. and International Epidemiology Databases to Evaluate Aids Network, . (2017) Tuberculosis treatment outcomes among HIV/TB-coinfected children in the International Epidemiology Databases to Evaluate AIDS (IeDEA) network. Journal of Acquired Immune Deficiency Syndromes, 75 (2). pp. 156-163.

Fenner, Lukas and Atkinson, Andrew and Boulle, Andrew and Fox, Matthew P. and Prozesky, Hans and Zürcher, Kathrin and Ballif, Marie and Furrer, Hansjakob and Zwahlen, Marcel and Davies, Mary-Ann and Egger, Matthias and International Epidemiology Database to Evaluate Aids in Southern, . (2017) HIV viral load as an independent risk factor for tuberculosis in South Africa: collaborative analysis of cohort studies. Journal of the International AIDS Society, 20. p. 21327.

Zürcher, Kathrin and Ballif, Marie and Zwahlen, Marcel and Rieder, Hans L. and Egger, Matthias and Fenner, Lukas. (2016) Tuberculosis mortality and living conditions in Bern, Switzerland, 1856-1950. PLoS one, 11 (2). e0149195.

Stucki, David and Ballif, Marie and Egger, Matthias and Furrer, Hansjakob and Altpeter, Ekkehardt and Battegay, Manuel and Droz, Sara and Bruderer, Thomas and Coscolla, Mireia and Borrell, Sonia and Zürcher, Kathrin and Janssens, Jean-Paul and Calmy, Alexandra and Mazza Stalder, Jesica and Jaton, Katia and Rieder, Hans L. and Pfyffer, Gaby E. and Siegrist, Hans H. and Hoffmann, Matthias and Fehr, Jan and Dolina, Marisa and Frei, Reno and Schrenzel, Jacques and Böttger, Erik C. and Gagneux, Sebastien and Fenner, Lukas. (2016) Standard genotyping overestimates transmission of Mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of clinical microbiology, 54 (7). pp. 1862-1870.

Stucki, David and Brites, Daniela and Jeljeli, Leïla and Coscolla, Mireia and Liu, Qingyun and Trauner, Andrej and Fenner, Lukas and Rutaihwa, Liliana and Borrell, Sonia and Luo, Tao and Gao, Qian and Kato-Maeda, Midori and Ballif, Marie and Egger, Matthias and Macedo, Rita and Mardassi, Helmi and Moreno, Milagros and Vilanova, Griselda Tudo and Fyfe, Janet and Globan, Maria and Thomas, Jackson and Jamieson, Frances and Guthrie, Jennifer L. and Asante-Poku, Adwoa and Yeboah-Manu, Dorothy and Wampande, Eddie and Ssengooba, Willy and Joloba, Moses and Boom, W. Henry and Basu, Indira and Bower, James and Saraiva, Margarida and Vasconcellos, Sidra E. G. and Suffys, Philip and Koch, Anastasia and Wilkinson, Robert and Gail-Bekker, Linda and Malla, Bijaya and Ley, Serej D. and Beck, Hans-Peter and de Jong, Bouke C. and Toit, Kadri and Sanchez-Padilla, Elisabeth and Bonnet, Maryline and Gil-Brusola, Ana and Frank, Matthias and Penlap Beng, Veronique N. and Eisenach, Kathleen and Alani, Issam and Ndung'u, Perpetual Wangui and Revathi, Gunturu and Gehre, Florian and Akter, Suriya and Ntoumi, Francine and Stewart-Isherwood, Lynsey and Ntinginya, Nyanda E. and Rachow, Andrea and Hoelscher, Michael and Cirillo, Daniela Maria and Skenders, Girts and Hoffner, Sven and Bakonyte, Daiva and Stakenas, Petras and Diel, Roland and Crudu, Valeriu and Moldovan, Olga and Al-Hajoj, Sahal and Otero, Larissa and Barletta, Francesca and Carter, E. Jane and Diero, Lameck and Supply, Philip and Comas, Iñaki and Niemann, Stefan and Gagneux, Sebastien. (2016) Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nature genetics, 48 (12). pp. 1535-1543.

Merker, Matthias and Blin, Camille and Mona, Stefano and Duforet-Frebourg, Nicolas and Lecher, Sophie and Willery, Eve and Blum, Michael G. B. and Rüsch-Gerdes, Sabine and Mokrousov, Igor and Aleksic, Eman and Allix-Béguec, Caroline and Antierens, Annick and Augustynowicz-Kopeć, Ewa and Ballif, Marie and Barletta, Francesca and Beck, Hans Peter and Barry, Clifton E. and Bonnet, Maryline and Borroni, Emanuele and Campos-Herrero, Isolina and Cirillo, Daniela and Cox, Helen and Crowe, Suzanne and Crudu, Valeriu and Diel, Roland and Drobniewski, Francis and Fauville-Dufaux, Maryse and Gagneux, Sébastien and Ghebremichael, Solomon and Hanekom, Madeleine and Hoffner, Sven and Jiao, Wei-Wei and Kalon, Stobdan and Kohl, Thomas A. and Kontsevaya, Irina and Lillebæk, Troels and Maeda, Shinji and Nikolayevskyy, Vladyslav and Rasmussen, Michael and Rastogi, Nalin and Samper, Sofia and Sanchez-Padilla, Elisabeth and Savic, Branislava and Shamputa, Isdore Chola and Shen, Adong and Sng, Li-Hwei and Stakenas, Petras and Toit, Kadri and Varaine, Francis and Vukovic, Dragana and Wahl, Céline and Warren, Robin and Supply, Philip and Niemann, Stefan and Wirth, Thierry. (2015) Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nature genetics, Vol. 47, H. 3. pp. 242-249.

Stucki, David and Ballif, Marie and Bodmer, Thomas and Coscolla, Mireia and Maurer, Anne-Marie and Droz, Sara and Butz, Christa and Borrell, Sonia and Längle, Christel and Feldmann, Julia and Furrer, Hansjakob and Mordasini, Carlo and Helbling, Peter and Rieder, Hans L. and Egger, Matthias and Gagneux, Sébastien and Fenner, Lukas. (2015) Tracking a tuberculosis outbreak over 21 years : strain-specific single-nucleotide polymorphism typing combined with targeted whole-genome sequencing. The Journal of Infectious Diseases, Vol. 211, H. 8. pp. 1306-1316.

Ballif, Marie and Renner, Lorna and Claude Dusingize, Jean and Leroy, Valeriane and Ayaya, Samuel and Wools-Kaloustian, Kara and Cortes, Claudia P. and McGowan, Catherine C. and Graber, Claire and Mandalakas, Anna M. and Mofenson, Lynne M. and Egger, Matthias and Kumara Wati, Ketut Dewi and Nallusamy, Revathy and Reubenson, Gary and Davies, Mary-Ann and Fenner, Lukas and International Epidemiologic Databases to Evaluate Aids, and International Epidemiologic Databases to Evaluate Aids IeDEA, . (2015) Tuberculosis in pediatric antiretroviral therapy programs in low- and middle-income countries : diagnosis and screening practices. Journal of the Pediatric Infectious Diseases Society, Vol. 4, H. 1. pp. 30-38.

Ballif, M. and Nhandu, V. and Wood, R. and Dusingize, J. C. and Carter, E. J. and Cortes, C. P. and McGowan, C. C. and Diero, L. and Graber, C. and Renner, L. and Hawerlander, D. and Kiertiburanakul, S. and Du, Q. T. and Sterling, T. R. and Egger, M. and Fenner, L. and International epidemiological Databases to Evaluate Aids, . (2014) Detection and management of drug-resistant tuberculosis in HIV-infected patients in lower-income countries. The international journal of tuberculosis and lung disease, Vol. 18, H. 11. pp. 1327-1336.

Ley, Serej D. and Harino, Paul and Vanuga, Kilagi and Kamus, Ruben and Carter, Robyn and Coulter, Christopher and Pandey, Sushil and Feldmann, Julia and Ballif, Marie and Siba, Peter M. and Phuanukoonnon, Suparat and Gagneux, Sebastien and Beck, Hans-Peter. (2014) Diversity of Mycobacterium tuberculosis and drug resistance in different provinces of Papua New Guinea. BMC microbiology, Vol. 14 , 307.

Fenner, Lukas and Egger, Matthias and Bodmer, Thomas and Furrer, Hansjakob and Ballif, Marie and Battegay, Manuel and Helbling, Peter and Fehr, Jan and Gsponer, Thomas and Rieder, Hans L. and Zwahlen, Marcel and Hoffmann, Matthias and Bernasconi, Enos and Cavassini, Matthias and Calmy, Alexandra and Dolina, Marisa and Frei, Reno and Janssens, Jean-Paul and Borrell, Sonia and Stucki, David and Schrenzel, Jacques and Böttger, Erik C. and Gagneux, Sebastien and Swiss HIV Cohort, and Molecular Epidemiology of Tuberculosis Study Groups, . (2013) HIV infection disrupts the sympatric host-pathogen relationship in human tuberculosis. PLoS genetics, Vol. 9, H. 3 , e1003318.

Kasymbekov, J. and Imanseitov, J. and Ballif, M. and Schurch, N. and Paniga, S. and Pilo, P. and Tonolla, M. and Benagli, C. and Akylbekova, K. and Jumakanova, Z. and Schelling, E. and Zinsstag, J.. (2013) Molecular epidemiology and antibiotic susceptibility of livestock Brucella melitensis isolates from Naryn Oblast, Kyrgyzstan. PLoS neglected tropical diseases, Vol. 7, H. 2 , e2047.

Fenner, Lukas and Ballif, Marie and Graber, Claire and Nhandu, Venerandah and Dusingize, Jean Claude and Cortes, Claudia P. and Carriquiry, Gabriela and Anastos, Kathryn and Garone, Daniela and Jong, Eefje and Gnokoro, Joachim Charles and Sued, Omar and Ajayi, Samuel and Diero, Lameck and Wools-Kaloustian, Kara and Kiertiburanakul, Sasisopin and Castelnuovo, Barbara and Lewden, Charlotte and Durier, Nicolas and Sterling, Timothy R. and Egger, Matthias and International epidemiological Databases to Evaluate Aids, . (2013) Tuberculosis in antiretroviral treatment programs in lower income countries: availability and use of diagnostics and screening. PloS one, Vol. 8, H. 10 , e77697.

Ballif, M. and Harino, P. and Ley, S. and Carter, R. and Coulter, C. and Niemann, S. and Borrell, S. and Fenner, L. and Siba, P. and Phuanukoonnon, S. and Gagneux, S. and Beck, H. P.. (2012) Genetic diversity of Mycobacterium tuberculosis in Madang, Papua New Guinea. The international journal of tuberculosis and lung disease, Vol. 16, H. 8. pp. 1100-1107.

Ballif, M. and Harino, P. and Ley, S. and Coscolla, M. and Niemann, S. and Carter, R. and Coulter, C. and Borrell, S. and Siba, P. and Phuanukoonnon, S. and Gagneux, S. and Beck, H. P.. (2012) Drug resistance-conferring mutations in Mycobacterium tuberculosis from Madang, Papua New Guinea. BMC microbiology, Vol. 12 , 191.

Sahraoui, N. and Ballif, M. and Zelleg, S. and Yousfi, N. and Ritter, C. and Friedel, U. and Amstutz, B. and Yala, D. and Boulahbal, F. and Guetarni, D. and Zinsstag, J. and Keller, P. M.. (2011) Mycobacterium algericum sp. nov., a novel rapidly growing species related to M. terrae complex and associated with goat lung lesions. International journal of systematic and evolutionary microbiology : IJSEM, Vol. 61, H. Pt 8. pp. 1870-1874.

Thesis

Ballif, Marie. Molecular epidemiology of Mycobacterium tuberculosis in Madang, Papua New Guinea. 2012, Doctoral Thesis, University of Basel, Faculty of Science.