Browse by Basel Contributors ID

2016

Swiss Institute of Bioinformatics Members, SIB. (2016) The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic acids research, 44 (D1). D27-D37.

2015

Elkon, Ran and Milon, Beatrice and Morrison, Laura and Shah, Manan and Vijayakumar, Sarath and Racherla, Manoj and Leitch, Carmen C. and Silipino, Lorna and Hadi, Shadan and Weiss-Gayet, Michèle and Barras, Emmanuèle and Schmid, Christoph D. and Ait-Lounis, Aouatef and Barnes, Ashley and Song, Yang and Eisenman, David J. and Eliyahu, Efrat and Frolenkov, Gregory I. and Strome, Scott E. and Durand, Bénédicte and Zaghloul, Norann A. and Jones, Sherri M. and Reith, Walter and Hertzano, Ronna. (2015) RFX transcription factors are essential for hearing in mice. Nature communications, 6. p. 8549.

Sater, Mohamad R. Abdul and Lamelas, Araceli and Wang, Guilin and Clark, Tyson A. and Röltgen, Katharina and Mane, Shrikant and Korlach, Jonas and Pluschke, Gerd and Schmid, Christoph D.. (2015) DNA methylation assessed by SMRT sequencing is linked to mutations in Neisseria meningitidis isolates. PLoS one, 10 (12). e0144612.

2014

Begitt, Andreas and Droescher, Mathias and Meyer, Thomas and Schmid, Christoph D. and Baker, Michelle and Antunes, Filipa and Owen, Markus R. and Naumann, Ronald and Decker, Thomas and Vinkemeier, Uwe. (2014) STAT1-cooperative DNA binding distinguishes type 1 from type 2 interferon signaling. Nature immunology, Vol. 15, H. 2. pp. 168-176.

Brancucci, Nicolas M. B. and Witmer, Kathrin and Schmid, Christoph and Voss, Till S.. (2014) A var gene upstream element controls protein synthesis at the level of translation initiation in Plasmodium falciparum. PloS one, Vol. 9, H. 6 , e100183.

Seguín-Estévez, Queralt and Dunand-Sauthier, Isabelle and Lemeille, Sylvain and Iseli, Christian and Ibberson, Mark and Ioannidis, Vassilios and Schmid, Christoph D. and Rousseau, Philippe and Barras, Emmanuèle and Geinoz, Antoine and Xenarios, Ioannis and Acha-Orbea, Hans and Reith, Walter. (2014) Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing. Nucleic Acids Research, Vol. 42, H. 15. pp. 9641-9655.

2013

Pjanic, M. and Schmid, C. D. and Gaussin, A. and Ambrosini, G. and Adamcik, J. and Pjanic, P. and Plasari, G. and Kerschgens, J. and Dietler, G. and Bucher, P. and Mermod, N.. (2013) Nuclear factor I genomic binding associates with chromatin boundaries. BMC genomics, Vol. 14 , 99.

Weirauch, Matthew T. and Cote, Atina and Norel, Raquel and Annala, Matti and Zhao, Yue and Riley, Todd R. and Saez-Rodriguez, Julio and Cokelaer, Thomas and Vedenko, Anastasia and Talukder, Shaheynoor and Bussemaker, Harmen J. and Morris, Quaid D. and Bulyk, Martha L. and Stolovitzky, Gustavo and Hughes, Timothy R.. (2013) Evaluation of methods for modeling transcription factor sequence specificity. Nature biotechnology, Vol. 31, H. 2. pp. 126-134.

2012

Schmid, C. and Kümmerle, A. and Blum, J. and Ghabri, S. and Kande, V. and Mutombo, W. and Ilunga, M. and Lumpungu, I. and Mutanda, S. and Nganzobo, P. and Tete, D. and Mubwa, N. and Kisala, M. and Blésson, S. and Mordt, O. V.. (2012) In-hospital safety in field conditions of nifurtimox eflornithine combination therapy (NECT) for T.b. gambiense sleeping sickness. PLoS neglected tropical diseases, Vol. 6, H. 11 , e1920.

Küpfer, I. and Schmid, C. and Allan, M. and Edielu, A. and Haary, E. P. and Kakembo, A. and Kibona, S. and Blum, J. and Burri, C.. (2012) Safety and efficacy of the 10-day melarsoprol schedule for the treatment of second stage rhodesiense sleeping sickness. PLoS neglected tropical diseases, Vol. 6, H. 8 , e1694.

Godel, C. and Kumar, S. and Koutsovoulos, G. and Ludin, P. and Nilsson, D. and Comandatore, F. and Wrobel, N. and Thompson, M. and Schmid, C. D. and Goto, S. and Bringaud, F. and Wolstenholme, A. and Bandi, C. and Epe, C. and Kaminsky, R. and Blaxter, M. and Mäser, P.. (2012) The genome of the heartworm, Dirofilaria immitis, reveals drug and vaccine targets. The FASEB Journal : official publication of the Federation of American Societies for Experimental Biology, Vol. 26, H. 11. pp. 4650-4661.

Witmer, K. and Schmid, C. D. and Brancucci, N. M. and Luah, Y. H. and Preiser, P. R. and Bozdech, Z. and Voss, T. S.. (2012) Analysis of subtelomeric virulence gene families in Plasmodium falciparum by comparative transcriptional profiling. Molecular microbiology, Vol. 84, H. 2. pp. 243-259.

Brancucci, N. M. and Witmer, K. and Schmid, C. D. and Flueck, C. and Voss, T. S.. (2012) Identification of a cis-acting DNA-protein interaction implicated in singular var gene choice in Plasmodium falciparum. Cellular microbiology, Vol. 14, H. 12. pp. 1836-1848.

2011

Gaida, A. and Becker, M. M. and Schmid, C. D. and Buhlmann, T. and Louis, E. J. and Beck, H. P.. (2011) Cloning of the repertoire of individual Plasmodium falciparum var genes using Transformation Associated Recombination (TAR). PLoS one, Vol. 6, H. 3 , e17782.

Pjanic, M. and Pjanic, P. and Schmid, C. and Ambrosini, G. and Gaussin, A. and Plasari, G. and Mazza, C. and Bucher, P. and Mermod, N.. (2011) Nuclear factor I revealed as family of promoter binding transcription activators. BMC genomics, Vol. 12, H. 1. p. 181.

Szalkowski, A. M. and Schmid, C. D.. (2011) Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing benchmarking efforts. Briefings in bioinformatics, Vol. 12, H. 6. pp. 626-633.

2010

Schmid, C. D. and Bucher, P.. (2010) MER41 repeat sequences contain inducible STAT1 binding sites. PLoS one, Vol. 5, H. 7 , e11425.

2009

Blum, J. and Schmid, C. and Burri, C. and Hatz, C. and Olson, C. and Fungula, B. and Kazumba, L. and Mangoni, P. and Mbo, F. and Deo, K. and Mpanya, A. and Dala, A. and Franco, J. R. and Pohlig, G. and Zellweger, M. J.. (2009) Cardiac alterations in human African trypanosomiasis (T.b. gambiense) with respect to the disease stage and antiparasitic treatment. PLoS neglected tropical diseases, Vol. 3, H. 2 , e383.

Priotto, G. and Kasparian, S. and Mutombo, W. and Ngouama, D. and Ghorashian, S. and Arnold, U. and Ghabri, S. and Baudin, E. and Buard, V. and Kazadi-Kyanza S., and Ilunga, M. and Mutangala, W. and Pohlig, G. and Schmid, C. and Karunakara, U. and Torreele, E. and Kande, V.. (2009) Nifurtimox-eflornithine combination therapy for second-stage African Trypanosoma brucei gambiense trypanosomiasis: a multicentre, randomised, phase III, non-inferiority trial. Lancet : a journal of British and foreign medicine, surgery, obstetrics, physiology, chemistry, pharmacology, public health and news, Vol. 374, no. 9683. pp. 56-64.