Items where Author is "Beerenwinkel, Niko"

2018

Wang, Congwei and Schmich, Fabian and Srivatsa, Sumana and Weidner, Julie and Beerenwinkel, Niko and Spang, Anne. (2018) Context-dependent deposition and regulation of mRNAs in P-bodies. eLife, 7. e29815.

28 August 2017

Singer, Jochen and Ruscheweyh, Hans-Joachim and Hofmann, Ariane L. and Thurnherr, Thomas and Singer, Franziska and Toussaint, Nora C. and Ng, Charlotte K. Y. and Piscuoglio, Salvatore and Beisel, Christian and Christofori, Gerhard and Dummer, Reinhard and Hall, Michael N. and Krek, Wilhelm and Levesque, Mitchell and Manz, Markus G. and Moch, Holger and Papassotiropoulos, Andreas and Stekhoven, Daniel J. and Wild, Peter and Wüst, Thomas and Rinn, Bernd and Beerenwinkel, Niko. (2017) NGS-pipe: a flexible, easily extendable, and highly configurable framework for NGS analysis. Bioinformatics . pp. 1-2.

2017

Heck, Angela and Milnik, Annette and Vukojevic, Vanja and Petrovska, Jana and Egli, Tobias and Singer, Jochen and Escobar, Pablo and Sengstag, Thierry and Coynel, David and Freytag, Virginie and Fastenrath, Matthias and Demougin, Philippe and Loos, Eva and Hartmann, Francina and Schicktanz, Nathalie and Delarue Bizzini, Bernardo and Vogler, Christian and Kolassa, Iris-Tatjana and Wilker, Sarah and Elbert, Thomas and Schwede, Torsten and Beisel, Christian and Beerenwinkel, Niko and de Quervain, Dominique J.-F. and Papassotiropoulos, Andreas. (2017) Exome sequencing of healthy phenotypic extremes links TROVE2 to emotional memory and PTSD. Nature Human Behaviour, 1. 0081.

2016

Andritschke, Daniel and Dilling, Sabrina and Emmenlauer, Mario and Welz, Tobias and Schmich, Fabian and Misselwitz, Benjamin and Rämö, Pauli and Rottner, Klemens and Kerkhoff, Eugen and Wada, Teiji and Penninger, Josef M. and Beerenwinkel, Niko and Horvath, Peter and Dehio, Christoph and Hardt, Wolf-Dietrich. (2016) A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion. PLoS ONE, 11 (9). e0161965.

21 October 2015

Schmich, Fabian and Szczurek, Ewa and Kreibich, Saskia and Dilling, Sabrina and Andritschke, Daniel and Casanova, Alain and Low, Shyan Huey and Eicher, Simone and Muntwiler, Simone and Emmenlauer, Mario and Rämo, Pauli and Conde-Alvarez, Raquel and von Mering, Christian and Hardt, Wolf-Dietrich and Dehio, Christoph and Beerenwinkel, Niko. (2015) Erratum to: gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens. Genome Biology, 16 (233). p. 1.

7 October 2015

Schmich, Fabian and Szczurek, Ewa and Kreibich, Saskia and Dilling, Sabrina and Andritschke, Daniel and Casanova, Alain and Low, Shyan Huey and Eicher, Simone and Muntwiler, Simone and Emmenlauer, Mario and Rämö, Pauli and Conde-Alvarez, Raquel and von Mering, Christian and Hardt, Wolf-Dietrich and Dehio, Christoph and Beerenwinkel, Niko. (2015) gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens. Genome Biology, 16 (220). pp. 1-12.

April 2015

Siebourg-Polster, Juliane and Mudrak, Daria and Emmenlauer, Mario and Rämö, Pauli and Dehio, Christoph and Greber, Urs and Fröhlich, Holger and Beerenwinkel, Niko. (2015) NEMix: single-cell nested effects models for probabilistic pathway stimulation. PLoS Computational Biology, 11 (4). e1004078.

December 2014

Rämö, Pauli and Drewek, Anna and Arrieumerlou, Cécile and Beerenwinkel, Niko and Ben-Tekaya, Houchaïma and Cardel, Bettina and Casanova, Alain and Conde-Alvarez, Raquel and Cossart, Pascale and Csúcs, Gábor and Eicher, Simone and Emmenlauer, Mario and Greber, Urs and Hardt, Wolf-Dietrich and Helenius, Ari and Kasper, Christoph and Kaufmann, Andreas and Kreibich, Saskia and Kühbacher, Andreas and Kunszt, Peter and Low, Shyan Huey and Mercer, Jason and Mudrak, Daria and Muntwiler, Simone and Pelkmans, Lucas and Pizarro-Cerdá, Javier and Podvinec, Michael and Pujadas, Eva and Rinn, Bernd and Rouilly, Vincent and Schmich, Fabian and Siebourg-Polster, Juliane and Snijder, Berend and Stebler, Michael and Studer, Gabriel and Szczurek, Ewa and Truttmann, Matthias and von Mering, Christian and Vonderheit, Andreas and Yakimovich, Artur and Bühlmann, Peter and Dehio, Christoph. (2014) Simultaneous analysis of large-scale RNAi screens for pathogen entry. BMC Genomics, 15 (1). p. 1162.

2014

Giallonardo, Francesca Di and Töpfer, Armin and Rey, Melanie and Prabhakaran, Sandhya and Duport, Yannick and Leemann, Christine and Schmutz, Stefan and Campbell, Nottania K. and Joos, Beda and Lecca, Maria Rita and Patrignani, Andrea and Däumer, Martin and Beisel, Christian and Rusert, Peter and Trkola, Alexandra and Günthard, Huldrych F. and Roth, Volker and Beerenwinkel, Niko and Metzner, Karin J.. (2014) Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations. Nucleic Acids Research, 42 (14). e115.

Prabhakaran, Sandhya and Rey, Melanie and Zagordi, Osvaldo and Beerenwinkel, Niko and Roth, Volker. (2014) HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model. IEEE/ACM transactions on computational biology and bioinformatics, Vol. 1, H. 1. pp. 182-191.

2013

Töpfer, Armin and Zagordi, Osvaldo and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2013) Probabilistic inference of viral quasispecies subject to recombination. Journal of computational biology, Vol. 20, H. 2. pp. 113-123.

2012

Beerenwinkel, Niko and Günthard, Huldrych F. and Roth, Volker and Metzner, Karin J.. (2012) Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data. Frontiers in microbiology, Vol. 3, H. 329.

Zagordi, Osvaldo and Töpfer, Armin and Prabhakaran, Sandhya and Roth, Volker and Halperin, Eran and Beerenwinkel, Niko. (2012) Probabilistic inference of viral quasispecies subject to recombination. In: Research in Computational Molecular Biology. Berlin, pp. 342-354.

2010

Zagordi, Osvaldo and Geyrhofer, Lukas and Roth, Volker and Beerenwinkel, Niko. (2010) Deep sequencing of a genetically heterogeneous sample : local haplotype reconstruction and read error correction. Journal of computational biology, Vol. 17, H. 3. pp. 417-428.