Items where Author is "Schwede, T."
Number of items: 46. 2011Baud, O. and Etter, S. and Spreafico, M. and Bordoli, L. and Schwede, T. and Vogel, H. and Pick, H. M.. (2011) The Mouse Eugenol Odorant Receptor : Structural and Functional Plasticity of a Broadly Tuned Odorant Binding Pocket. Biochemistry, Vol. 50, H. 5. pp. 843-853. Gabanyi, M. J. and Adams, P. D. and Arnold, K. and Bordoli, L. and Carter, L. G. and Flippen-Andersen, J. and Gifford, L. and Haas, J. and Kouranov, A. and McLaughlin, W. A. and Micallef, D. I. and Minor, W. and Shah, R. and Schwede, T. and Tao, Y. P. and Westbrook, J. D. and Zimmerman, M. and Berman, H. M.. (2011) The Structural Biology Knowledgebase : a portal to protein structures, sequences, functions, and methods. Journal of structural and functional genomics, Vol. 12, H. 2. pp. 45-54. Benkert, P. and Biasini, M. and Schwede, T.. (2011) Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, Vol. 27, H. 3. pp. 343-350. 2010Podvinec, M. and Lim, S. P. and Schmidt, T. B. and Scarsi, M. and Wen, D. and Sonntag, L. S. and Sanschagrin, P. and Shenkin, P. S. and Schwede, T.. (2010) Novel Inhibitors of Dengue Virus Methyltransferase : discovery by in vitro-driven virtual screening on a Desktop Computer Grid. Journal of Medicinal Chemistry, Vol. 53, H. 4. pp. 1483-1495. Biasini, M. and Mariani, V. and Haas, J. and Scheuber, S. and Schenk, AD. and Schwede, T. and Philippsen, A.. (2010) OpenStructur : a flexible software framework for computational structural biology. Bioinformatics, Vol. 26. pp. 2626-2628. Haas, J. and Schwede, T.. (2010) Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing. ERCIM News, Vol. 82. pp. 20-21. 2009Guex, N. and Peitsch, M. C. and Schwede, T.. (2009) Automated comparative protein structure modeling with Swiss-model and Swiss-PdbViewer : a historical perspective. Electrophoresis, Vol. 30, H. S1. pp. 162-173. Pick, H. and Etter, S. and Baud, O. and Schmauder, R. and Bordoli, L. and Schwede, T. and Vogel, H.. (2009) Dual activities of odorants on olfactory and nuclear hormone receptors. Journal of biological chemistry, Vol. 284, H. 44. pp. 30547-30555. Benkert, P. and Tosatto, S. C. and Schwede, T.. (2009) Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust. Proteins, Vol. 77, H. S9. pp. 173-180. Schwede, T. and Sali, A. and Honig, B. and Levitt, M. and Berman, H. M. and Jones, D. and Brenner, S. E. and Burley, S. K. and Das, R. and Dokholyan, N. V. and Dunbrack, R. L. J. and Fidelis, K. and Fiser, A. and Godzik, A. and Huang, Y. J. and Humblet, C. and Jacobson, M. P. and Joachimiak, A. and Krystek, S. R. J. and Kortemme, T. and Kryshtafovych, A. and Montelione, G. T. and Moult, J. and Murray, D. and Sanchez, R. and Sosnick, T. R. and Standley, D. M. and Stouch, T. and Vajda, S. and Vasquez, M. and Westbrook, J. D. and Wilson, I. A.. (2009) Outcome of a workshop on applications of protein models in biomedical research. Structure, Vol. 17, H. 2. pp. 151-159. Schwede, T. and Peitsch, M. C.. (2009) Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics. In: Bioinformatics. A Swiss Perspective. New Jersey, pp. 219-246. Bordoli, L. and Kiefer, F. and Arnold, K. and Benkert, P. and Battey, J. and Schwede, T.. (2009) Protein structure homology modelling using SWISS-MODEL Workspace. Nature Protocols, Vol. 4, H. 1. pp. 1-13. Benkert, P. and Kunzli, M. and Schwede, T.. (2009) QMEAN server for protein model quality estimation. Nucleic Acids Research, 37 (2 Supplement). W510-W514. Benkert, P. and Schwede, T. and Tosatto, S. C.. (2009) QMEANclust : estimation of protein model quality by combining a composite scoring function with structural density information. BMC Structural Biology, Vol. 9 , 35. Duerig, A. and Abel, S. and Folcher, M. and Nicollier, M. and Schwede, T. and Amiot, N. and Giese, B. and Jenal, U.. (2009) Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes & development, Vol. 23, H. 1. pp. 93-104. Kiefer, F. and Arnold, K. and Kunzli, M. and Bordoli, L. and Schwede, T.. (2009) The Swiss-model Repository and associated resources. Nucleic Acids Research, 37 (1 Supplement). D387-D392. Arnold, K. and Kiefer, F. and Kopp, J. and Battey, J. N. and Podvinec, M. and Westbrook, J. D. and Berman, H. M. and Bordoli, L. and Schwede, T.. (2009) The protein model portal. Journal of structural and functional genomics, 10 (1). pp. 1-8. Berman, H. M. and Westbrook, J. D. and Gabanyi, M. J. and Tao, W. and Shah, R. and Kouranov, A. and Schwede, T. and Arnold, K. and Kiefer, F. and Bordoli, L. and Kopp, J. and Podvinec, M. and Adams, P. D. and Carter, L. G. and Minor, W. and Nair, R. and Baer, J. L.. (2009) The protein structure initiative structural genomics knowledgebase. Nucleic Acids Research, 37 (1 Supplement). D365-D368. 2008Podvinec, M. and Schwede, T. and Peitsch, M. C.. (2008) Docking for neglected diseases as community efforts. In: Computational structural biology. Singapore, pp. 683-704. Schwede, T. and Sali, A. and Eswar, N. and Peitsch, M. C.. (2008) Protein Structure Modeling. In: Computational structural biology. Singapore, p. 700. 2007Kopp, J. and Bordoli, L. and Battey, J. N. D. and Kiefer, F. and Schwede, T.. (2007) Assessment of CASP7 predictions for template-based modeling targets. Proteins, Vol. 69 Suppl 8. pp. 38-56. Bordoli, L. and Kiefer, F. and Schwede, T.. (2007) Assessment of disorder predictions in CASP7. Proteins, Vol. 69 Suppl 8. pp. 129-136. Battey, J. N. D. and Kopp, J. and Bordoli, L. and Read, R. J. and Clarke, N. D. and Schwede, T.. (2007) Automated server predictions in CASP7. Proteins, Vol. 69 Suppl 8. pp. 68-82. Clarke, N. D. and Ezkurdia, I. and Kopp, J. and Read, R. J. and Schwede, T. and Tress, M.. (2007) Domain Definition and Target Classification for CASP7. Proteins, Vol. 69, H. S8. pp. 10-18. Junne, T. and Schwede, T. and Goder, V. and Spiess, M.. (2007) Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology. Journal of biological chemistry, Vol. 282, H. 45. pp. 33201-33209. Michelsen, K. and Schmid, V. and Metz, J. and Heusser, K. and Liebel, U. and Schwede, T. and Spang, A. and Schwappach, B.. (2007) Novel cargo-binding site in the beta and delta subunits of coatomer. The Journal of cell biology, Vol. 179, H. 2. pp. 209-217. Zosso, D. and Arnold, K. and Schwede, T. and Podvinec, M.. (2007) SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid. In: Twentieth IEEE international symposium on computer-based medical systems, CBMS 2007. Los Alamitos, Calif., pp. 406-411. Scarsi, M. and Podvinec, M. and Roth, A. and Hug, H. and Kersten, S. and Albrecht, H. and Schwede, T. and Meyer, U. A. and Rucker, C.. (2007) Sulfonylureas and glinides exhibit peroxisome proliferator-activated receptor gamma activity : a combined virtual screening and biological assay approach. Molecular pharmacology, Vol. 71, H. 2. pp. 398-406. Zosso, D. and Podvinec, M. and Muller, M. and Aebersold, R. and Peitsch, M. C. and Schwede, T.. (2007) Tandem mass spectrometry protein identification on a PC grid. Studies in health technology and informatics, Vol. 126. pp. 3-12. 2006Thorsteinsdottir, H. B. and Schwede, T. and Zoete, V. and Meuwly, M.. (2006) How inaccuracies in protein structure models affect estimates of protein-ligand interactions : computational analysis of HIV-I protease inhibitor binding. Proteins, 65 (2). pp. 407-423. Arnold, K. and Bordoli, L. and Kopp, J. and Schwede, T.. (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, Vol. 22, H. 2. pp. 195-201. Kopp, J. and Schwede, T.. (2006) The Swiss-model Repository : new features and functionalities. Nucleic Acids Research, 34 (D1). D315-D318. Podvinec, M. and Maffioletti, S. and Kunszt, P. and Arnold, K. and Cerutti, L. and Nyffeler, B. and Schlapbach, R. and Turker, C. and Stockinger, H. and Thomas, A. J. and Peitsch, M. C. and Schwede, T.. (2006) The SwissBioGrid Project : objectives, preliminary results and lessons learned. In: e-Science 2006 : 2nd IEEE International Conference on e-Science and Grid Computing, e-Science 2006, 148. Los Alamitos, Calif.. Junne, T. and Schwede, T. and Goder, V. and Spiess, M.. (2006) The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Molecular Biology of the Cell, 17 (9). pp. 4063-4068. 2004Kopp, J. and Schwede, T.. (2004) Automated protein structure homology modeling : a progress report. Pharmacogenomics, Vol. 5, H. 4. pp. 405-416. Kopp, J. and Schwede, T.. (2004) The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Research, 32 (1 Supplement). D230-D234. 2003Deutsch, S. and Rideau, A. and Bochaton-Piallat, M. and Merla, G. and Geinoz, A. and Gabbiani, G. and Schwede, T. and Matthes, T. and Antonarakis, S. E. and Beris, P.. (2003) Asp1424Asn MYH9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly/Fechtner syndrome. Blood, Vol. 102. pp. 529-534. Fritzsche, H. B. and Schwede, T. and Schulz, G. E.. (2003) Covalent and three-dimensional structure of the cyclodextrinase from Flavobacterium sp. no. 92. European journal of biochemistry, Vol. 270, H. 10. pp. 2332-2341. Schwede, T. and Kopp, J. and Guex, N. and Peitsch, M. C.. (2003) Swiss-model : an automated protein homology-modeling server. Nucleic Acids Research, 31 (13). pp. 3381-3385. 2002Wattenhofer, M. and Di Iorio, M. V. and Rabionet, R. and Dougherty, L. and Pampanos, A. and Schwede, T. and Montserrat-Sentis, B. and Arbones, M. L. and Iliades, T. and Pasquadibisceglie, A. and D'Amelio, M. and Alwan, S. and Rossier, C. and Dahl, H. H. M. and Petersen, M. B. and Estivill, X. and Gasparini, P. and Scott, H. S. and Antonarakis, S. E.. (2002) Mutations in the TMPRSS3 gene are a rare cause of childhood non-syndromic deafness in Caucasian patients. Journal of molecular medicine, Vol. 80. pp. 124-131. Kopp, J. and Peitsch, M. C. and Schwede, T.. (2002) Protein Structure Modeling in Functional Genomics. In: Frontiers in Computational Genomics. Horizon Scientific Press. Peitsch, M. C. and Schwede, T. and Diemand, A. and Guex, N.. (2002) Protein homology modeling. Nature encyclopedia of the human genome, Vol. 4. 2001Masmoudi, S. and Antonarakis, S. E. and Schwede, T. and Ghorbel, A. M. and Gratri, M. and Pappasavas, M. P. and Drira, M. and Elgaied Boulila, A. and Wattenhofer, M. and Rossier, C. and Scott, H. S. and Ayadi, H. and Guipponi, M.. (2001) Novel missense mutations of TMPRSS3 in two consanguineous Tunisian families with non-syndromic autosomal recessive deafness. Human mutation, Vol. 18, no. 2. pp. 101-108. 2000Peitsch, M. C. and Schwede, T. and Guex, N.. (2000) Automated protein modelling-the proteome in 3D. Pharmacogenomics, Vol. 1, no. 3. pp. 257-266. Guex, N. and Schwede, T. and Peitsch, M. C.. (2000) Protein Tertiary Structure Modeling. In: Current Protocols in Protein Science, nit 2.8.1-2.8.17. [New York]. Schwede, T. and Diemand, A. and Guex, N. and Peitsch, M. C.. (2000) Protein structure computing in the genomic era. Research in microbiology, Vol. 151. pp. 107-112. |
