Items where Division is "09 Associated Institutions > Swiss Tropical and Public Health Institute (Swiss TPH) > Department of Medical Parasitology and Infection Biology (MPI) > Tuberculosis Ecology and Evolution Unit (Gagneux)"

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Andre, E. and Goeminne, L. and Cabibbe, A. and Beckert, P. and Kabamba Mukadi, B. and Mathys, V. and Gagneux, S. and Niemann, S. and Van Ingen, J. and Cambau, E.. (2017) Consensus numbering system for the rifampicin resistance-associated rpoB gene mutations in pathogenic mycobacteria. Clinical microbiology and infection, 23 (3). pp. 167-172.

Armitage, Sophie A. O. and Kurtz, Joachim and Brites, Daniela and Dong, Yuemei and Du Pasquier, Louis and Wang, Han-Ching. (2017) Dscam1 in pancrustacean immunity: current status and a look to the future. Frontiers in immunology, 8. p. 662.

Blondiaux, Nicolas and Moune, Martin and Desroses, Matthieu and Frita, Rosangela and Flipo, Marion and Mathys, Vanessa and Soetaert, Karine and Kiass, Mehdi and Delorme, Vincent and Djaout, Kamel and Trebosc, Vincent and Kemmer, Christian and Wintjens, René and Wohlkönig, Alexandre and Antoine, Rudy and Huot, Ludovic and Hot, David and Coscolla, Mireia and Feldmann, Julia and Gagneux, Sebastien and Locht, Camille and Brodin, Priscille and Gitzinger, Marc and Déprez, Benoit and Willand, Nicolas and Baulard, Alain R.. (2017) Reversion of antibiotic resistance in Mycobacterium tuberculosis by spiroisoxazoline SMARt-420. Science, 355 (6330). pp. 1206-1211.

Borrell, Sonia and Trauner, Andrej. (2017) Strain diversity and the evolution of antibiotic resistance. Advances in experimental medicine and biology, 1019. pp. 263-279.

Brites, Daniela and Gagneux, Sebastien. (2017) The nature and evolution of genomic diversity in the Mycobacterium tuberculosis complex. Advances in experimental medicine and biology, 1019. pp. 1-26.

Coscolla, Mireia. (2017) Biological and epidemiological consequences of MTBC diversity. Advances in experimental medicine and biology, 1019. pp. 95-116.

Fenner, Lukas and Atkinson, Andrew and Boulle, Andrew and Fox, Matthew P. and Prozesky, Hans and Zürcher, Kathrin and Ballif, Marie and Furrer, Hansjakob and Zwahlen, Marcel and Davies, Mary-Ann and Egger, Matthias and International Epidemiology Database to Evaluate Aids in Southern, . (2017) HIV viral load as an independent risk factor for tuberculosis in South Africa: collaborative analysis of cohort studies. Journal of the International AIDS Society, 20. p. 21327.

Ghielmetti, Giovanni and Coscolla, Mireia and Ruetten, Maja and Friedel, Ute and Loiseau, Chloé and Feldmann, Julia and Steinmetz, Hanspeter W. and Stucki, David and Gagneux, Sebastien. (2017) Tuberculosis in Swiss captive Asian elephants: microevolution of Mycobacterium tuberculosis characterized by multilocus variable-number tandem-repeat analysis and whole-genome sequencingle-number tandem-repeat analysis and whole-genome sequencing. Scientific reports, 7 (1). p. 14647.

Gygli, Sebastian M. and Borrell, Sonia and Trauner, Andrej and Gagneux, Sebastien. (2017) Antimicrobial resistance in Mycobacterium tuberculosis : mechanistic and evolutionary perspectives. FEMS Microbiology Reviews, 41 (3). pp. 354-373.

Hella, Jerry and Morrow, Carl and Mhimbira, Francis and Ginsberg, Samuel and Chitnis, Nakul and Gagneux, Sebastien and Mutayoba, Beatrice and Wood, Robin and Fenner, Lukas. (2017) Tuberculosis transmission in public locations in Tanzania: A novel approach to studying airborne disease transmission. Journal of Infection, 75 (3). pp. 191-197.

Hiza, Hellen and Doulla, Basra and Sasamalo, Mohamed and Hella, Jerry and Kamwela, Lujeko and Mhimbira, Francis and Reither, Klaus and Gagneux, Sebastien and Jugheli, Levan and Fenner, Lukas. (2017) Preservation of sputum samples with cetylpyridinium chloride (CPC) for tuberculosis cultures and Xpert MTB/RIF in a low-income country. BMC infectious diseases, 17. p. 542.

Koch, Anastasia S. and Brites, Daniela and Stucki, David and Evans, Joanna C. and Seldon, Ronnett and Heekes, Alexa and Mulder, Nicola and Nicol, Mark and Oni, Tolu and Mizrahi, Valerie and Warner, Digby F. and Parkhill, Julian and Gagneux, Sebastien and Martin, Darren P. and Wilkinson, Robert J.. (2017) The influence of HIV on the evolution of Mycobacterium tuberculosis. Molecular biology and evolution, 34 (7). pp. 1654-1668.

Miotto, Paolo and Tessema, Belay and Tagliani, Elisa and Chindelevitch, Leonid and Starks, Angela M. and Emerson, Claudia and Hanna, Debra and Kim, Peter S. and Liwski, Richard and Zignol, Matteo and Gilpin, Christopher and Niemann, Stefan and Denkinger, Claudia M. and Fleming, Joy and Warren, Robin M. and Crook, Derrick and Posey, James and Gagneux, Sebastien and Hoffner, Sven and Rodrigues, Camilla and Comas, Iñaki and Engelthaler, David M. and Murray, Megan and Alland, David and Rigouts, Leen and Lange, Christoph and Dheda, Keertan and Hasan, Rumina and Ranganathan, Uma Devi K. and McNerney, Ruth and Ezewudo, Matthew and Cirillo, Daniela M. and Schito, Marco and Köser, Claudio U. and Rodwell, Timothy C.. (2017) A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis. The European respiratory journal, 50 (6). p. 1701354.

Ofori-Anyinam, B. and Dolganov, G. and Van, T. and Davis, J. L. and Walter, N. D. and Garcia, B. J. and Voskuil, M. and Fissette, K. and Diels, M. and Driesen, M. and Meehan, C. J. and Yeboah-Manu, D. and Coscolla, M. and Gagneuyx, S. and Antonio, M. and Schoolnik, G. K. and Gehre, F. and de Jong, B. C.. (2017) Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. Tuberculosis, 104. pp. 58-64.

Said, Khadija and Hella, Jerry and Mhalu, Grace and Chiryankubi, Mary and Masika, Edward and Maroa, Thomas and Mhimbira, Francis and Kapalata, Neema and Fenner, Lukas. (2017) Diagnostic delay and associated factors among patients with pulmonary tuberculosis in Dar es Salaam, Tanzania. Infectious Diseases of Poverty, 6. p. 64.

Trauner, Andrej and Liu, Qingyun and Via, Laura E. and Liu, Xin and Ruan, Xianglin and Liang, Lili and Shi, Huimin and Chen, Ying and Wang, Ziling and Liang, Ruixia and Zhang, Wei and Wei, Wang and Gao, Jingcai and Sun, Gang and Brites, Daniela and England, Kathleen and Zhang, Guolong and Gagneux, Sebastien and Barry, Clifton E. and Gao, Qian. (2017) The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy. Genome biology, 18. p. 71.

Swiss Institute of Bioinformatics Members, SIB. (2016) The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic acids research, 44 (D1). D27-D37.

Boillat-Blanco, Noémie and Bovet, Pascal and Ramaiya, Kaushik L. and Mganga, Maliwasa and Minja, Lilian T. and Saleh, Lanja and Imboden, Medea and Schindler, Christian and Gagneux, Sebastien and Daubenberger, Claudia and Reither, Klaus and Probst-Hensch, Nicole. (2016) Association between tuberculosis, diabetes and 25 hydroxyvitamin D in Tanzania: a longitudinal case control study. BMC Infectious Diseases, 16 (1). p. 626.

Boillat-Blanco, Noémie and Ramaiya, Kaushik L. and Mganga, Maliwasa and Minja, Lilian T. and Bovet, Pascal and Schindler, Christian and Von Eckardstein, Arnold and Gagneux, Sebastien and Daubenberger, Claudia and Reither, Klaus and Probst-Hensch, Nicole. (2016) Transient hyperglycemia in patients with tuberculosis in Tanzania : implications for diabetes screening algorithms. Journal of Infectious Diseases, 213 (7). pp. 1163-1172.

Charles, M. Katherine and Lindegren, Mary Lou and Wester, C. William and Blevins, Meridith and Sterling, Timothy R. and Dung, Nguyen Thi and Dusingize, Jean Claude and Avit-Edi, Divine and Durier, Nicolas and Castelnuovo, Barbara and Nakigozi, Gertrude and Cortes, Claudia P. and Ballif, Marie and Fenner, Lukas. (2016) Implementation of tuberculosis intensive case finding, isoniazid preventive therapy, and infection control ("Three I's") and HIV-tuberculosis service integration in lower income countries. PLoS one, 11 (4). e0153243.

Demers, Anne-Marie and Venter, Amour and Friedrich, Sven O. and Rojas-Ponce, Gabriel and Mapamba, Daniel and Jugheli, Levan and Sasamalo, Mohammed and Almeida, Deepak and Dorasamy, Afton and Jentsch, Ute and Gibson, Mara and Everitt, Daniel and Eisenach, Kathleen D. and Diacon, Andreas H.. (2016) Direct susceptibility testing of Mycobacterium tuberculosis for pyrazinamide by use of the bactec MGIT 960 system. Journal of clinical microbiology, 54 (5). pp. 1276-1281.

Domínguez, J. and Boettger, E. C. and Cirillo, D. and Cobelens, F. and Eisenach, K. D. and Gagneux, S. and Hillemann, D. and Horsburgh, R. and Molina-Moya, B. and Niemann, S. and Tortoli, E. and Whitelaw, A. and Lange, C. and Tbnet, and Resist-TB networks, . (2016) Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis : a TBNET/RESIST-TB consensus statement. The international journal of tuberculosis and lung disease, 20 (1). pp. 24-42.

Mhimbira, Francis and Hella, Jerry and Maroa, Thomas and Kisandu, Shadrack and Chiryamkubi, Magreth and Said, Khadija and Mhalu, Grace and Mkopi, Abdallah and Mutayoba, Beatrice and Reither, Klaus and Gagneux, Sébastien and Fenner, Lukas. (2016) Home-based and facility-based directly observed therapy of tuberculosis treatment under programmatic conditions in urban Tanzania. PLoS one, 11 (8). e0161171.

Otchere, I. D. and Asante-Poku, A. and Osei-Wusu, S. and Baddoo, A. and Sarpong, E. and Ganiyu, A. H. and Aboagye, S. Y. and Forson, A. and Bonsu, F. and Yahayah, A. I. and Koram, K. and Gagneux, S. and Yeboah-Manu, D.. (2016) Detection and characterization of drug-resistant conferring genes in Mycobacterium tuberculosis complex strains : a prospective study in two distant regions of Ghana. Tuberculosis, 99. pp. 147-154.

Petrone, L. and Cannas, A. and Vanini, V. and Cuzzi, G. and Aloi, F. and Nsubuga, M. and Sserunkuma, J. and Nazziwa, R. A. and Jugheli, L. and Lukindo, T. and Giradi, E. and Antinori, A. and Pucci, L. and Reither, K. and Goletti, D.. (2016) Blood and urine inducible protein 10 as potential markers of disease activity. The international journal of tuberculosis and lung disease, 20 (11). pp. 1554-1561.

Pohl, Christian and Rutaihwa, Liliana K. and Haraka, Frederick and Nsubuga, Martin and Aloi, Francesco and Ntinginya, Nyanda E. and Mapamba, Daniel and Heinrich, Norbert and Hoelscher, Michael and Marais, Ben J. and Jugheli, Levan and Reither, Klaus. (2016) Limited value of whole blood Xpert(®) MTB/RIF for diagnosing tuberculosis in children. The journal of infection, 73 (4). pp. 326-335.

Sikalengo, George and Ramirez, Adria and Faini, Diana and Mwamelo, Kim and Battegay, Manuel and Jugheli, Levan and Hatz, Christoph and Reither, Klaus and Letang, Emilio. (2016) Tuberculous spondylitis diagnosed through Xpert MTB/RIF assay in urine: a case report. BMC Infectious Diseases, 16 (1). p. 514.

Stucki, David and Ballif, Marie and Egger, Matthias and Furrer, Hansjakob and Altpeter, Ekkehardt and Battegay, Manuel and Droz, Sara and Bruderer, Thomas and Coscolla, Mireia and Borrell, Sonia and Zürcher, Kathrin and Janssens, Jean-Paul and Calmy, Alexandra and Mazza Stalder, Jesica and Jaton, Katia and Rieder, Hans L. and Pfyffer, Gaby E. and Siegrist, Hans H. and Hoffmann, Matthias and Fehr, Jan and Dolina, Marisa and Frei, Reno and Schrenzel, Jacques and Böttger, Erik C. and Gagneux, Sebastien and Fenner, Lukas. (2016) Standard genotyping overestimates transmission of Mycobacterium tuberculosis among immigrants in a low-incidence country. Journal of clinical microbiology, 54 (7). pp. 1862-1870.

Stucki, David and Brites, Daniela and Jeljeli, Leïla and Coscolla, Mireia and Liu, Qingyun and Trauner, Andrej and Fenner, Lukas and Rutaihwa, Liliana and Borrell, Sonia and Luo, Tao and Gao, Qian and Kato-Maeda, Midori and Ballif, Marie and Egger, Matthias and Macedo, Rita and Mardassi, Helmi and Moreno, Milagros and Vilanova, Griselda Tudo and Fyfe, Janet and Globan, Maria and Thomas, Jackson and Jamieson, Frances and Guthrie, Jennifer L. and Asante-Poku, Adwoa and Yeboah-Manu, Dorothy and Wampande, Eddie and Ssengooba, Willy and Joloba, Moses and Boom, W. Henry and Basu, Indira and Bower, James and Saraiva, Margarida and Vasconcellos, Sidra E. G. and Suffys, Philip and Koch, Anastasia and Wilkinson, Robert and Gail-Bekker, Linda and Malla, Bijaya and Ley, Serej D. and Beck, Hans-Peter and de Jong, Bouke C. and Toit, Kadri and Sanchez-Padilla, Elisabeth and Bonnet, Maryline and Gil-Brusola, Ana and Frank, Matthias and Penlap Beng, Veronique N. and Eisenach, Kathleen and Alani, Issam and Ndung'u, Perpetual Wangui and Revathi, Gunturu and Gehre, Florian and Akter, Suriya and Ntoumi, Francine and Stewart-Isherwood, Lynsey and Ntinginya, Nyanda E. and Rachow, Andrea and Hoelscher, Michael and Cirillo, Daniela Maria and Skenders, Girts and Hoffner, Sven and Bakonyte, Daiva and Stakenas, Petras and Diel, Roland and Crudu, Valeriu and Moldovan, Olga and Al-Hajoj, Sahal and Otero, Larissa and Barletta, Francesca and Carter, E. Jane and Diero, Lameck and Supply, Philip and Comas, Iñaki and Niemann, Stefan and Gagneux, Sebastien. (2016) Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nature genetics, 48 (12). pp. 1535-1543.

Yeboah-Manu, Dorothy and Asare, P. and Asante-Poku, A. and Otchere, I. D. and Osei-Wusu, S. and Danso, E. and Forson, A. and Koram, K. A. and Gagneux, Sebastien. (2016) Spatio-temporal distribution of Mycobacterium tuberculosis complex strains in Ghana. PLoS One, 11 (8). e0161892.

Zumla, Alimuddin and Rao, Martin and Wallis, Robert S. and Kaufmann, Stefan H. E. and Rustomjee, Roxana and Mwaba, Peter and Vilaplana, Cris and Yeboah-Manu, Dorothy and Chakaya, Jeremiah and Ippolito, Giuseppe and Azhar, Esam and Hoelscher, Michael and Maeurer, Markus and Host-Directed Therapies Network consortium, . (2016) Host-directed therapies for infectious diseases : current status, recent progress, and future prospects. The Lancet infectious diseases, 16 (4). e47-e63.

Zürcher, Kathrin and Ballif, Marie and Zwahlen, Marcel and Rieder, Hans L. and Egger, Matthias and Fenner, Lukas. (2016) Tuberculosis mortality and living conditions in Bern, Switzerland, 1856-1950. PLoS one, 11 (2). e0149195.

Asante-Poku, A. and Otchere, I. D. and Danso, E. and Mensah, D. D. and Bonsu, F. and Gagneux, S. and Yeboah-Manu, D.. (2015) Evaluation of geno type(®) MTBDRplus for the rapid detection of drug-resistant tuberculosis in Ghana. The international journal of tuberculosis and lung disease, Vol. 19, H. 8. pp. 954-959.

Asante-Poku, Adwoa and Yeboah-Manu, Dorothy and Otchere, Isaac Darko and Aboagye, Samuel Y. and Stucki, David and Hattendorf, Jan and Borrell, Sonia and Feldmann, Julia and Danso, Emelia and Gagneux, Sebastien. (2015) Mycobacterium africanum is associated with patient ethnicity in Ghana. PLoS neglected tropical diseases, Vol. 9, H. 1, e3370.

Ballif, Marie and Renner, Lorna and Claude Dusingize, Jean and Leroy, Valeriane and Ayaya, Samuel and Wools-Kaloustian, Kara and Cortes, Claudia P. and McGowan, Catherine C. and Graber, Claire and Mandalakas, Anna M. and Mofenson, Lynne M. and Egger, Matthias and Kumara Wati, Ketut Dewi and Nallusamy, Revathy and Reubenson, Gary and Davies, Mary-Ann and Fenner, Lukas and International Epidemiologic Databases to Evaluate Aids, and International Epidemiologic Databases to Evaluate Aids IeDEA, . (2015) Tuberculosis in pediatric antiretroviral therapy programs in low- and middle-income countries : diagnosis and screening practices. Journal of the Pediatric Infectious Diseases Society, Vol. 4, H. 1. pp. 30-38.

Bloemberg, Guido V. and Keller, Peter M. and Stucki, David and Stuckia, David and Trauner, Andrej and Borrell, Sonia and Latshang, Tsogyal and Coscolla, Mireia and Rothe, Thomas and Hömke, Rico and Ritter, Claudia and Feldmann, Julia and Schulthess, Bettina and Gagneux, Sebastien and Böttger, Erik C.. (2015) Acquired resistance to bedaquiline and delamanid in therapy for tuberculosis. The New England journal of medicine, 373 (20). pp. 1986-1988.

Brites, Daniela and Du Pasquier, Louis. (2015) Somatic and germline diversification of a putative immunoreceptor within one Phylum : dscam in arthropods. Results and problems in cell differentiation, 57. pp. 131-158.

Brites, Daniela and Gagneux, Sebastien. (2015) Co-evolution of Mycobacterium tuberculosis and Homo sapiens. Immunological reviews, Vol. 264, H. 1. pp. 6-24.

Cabibbe, Andrea M. and Miotto, Paolo and Moure, Raquel and Alcaide, Fernando and Feuerriegel, Silke and Pozzi, Gianni and Nikolayevskyy, Vladislav and Drobniewski, Francis and Niemann, Stefan and Reither, Klaus and Cirillo, Daniela M.. (2015) Lab-on-chip-based platform for fast molecular diagnosis of multidrug-resistant tuberculosis. Journal of clinical microbiology, 53 (12). pp. 3876-3880.

Comas, Iñaki and Hailu, Elena and Kiros, Teklu and Bekele, Shiferaw and Mekonnen, Wondale and Gumi, Balako and Tschopp, Rea and Ameni, Gobena and Hewinson, R. Glyn and Robertson, Brian D. and Goig, Galo A. and Stucki, David and Gagneux, Sebastien and Aseffa, Abraham and Young, Douglas and Berg, Stefan. (2015) Population genomics of Mycobacterium tuberculosis in Ethiopia contradicts the virgin soil hypothesis for human tuberculosis in sub-saharan Africa. Current biology, 25 (24). pp. 3260-3206.

Coscolla, Mireia and Barry, Pennan M. and Oeltmann, John E. and Koshinsky, Heather and Shaw, Tambi and Cilnis, Martin and Posey, Jamie and Rose, Jordan and Weber, Terry and Fofanov, Viacheslav Y. and Gagneux, Sebastien and Kato-Maeda, Midori and Metcalfe, John Z.. (2015) Genomic epidemiology of multidrug-resistant Mycobacterium tuberculosis during transcontinental spread. The Journal of Infectious Diseases, Vol. 212, H. 2. pp. 302-310.

Coscolla, Mireia and Copin, Richard and Sutherland, Jayne and Gehre, Florian and de Jong, Bouke and Owolabi, Olumuiya and Mbayo, Georgetta and Giardina, Federica and Ernst, Joel D. and Gagneux, Sebastien. (2015) M. tuberculosis T cell epitope analysis reveals paucity of antigenic variation and identifies rare variable TB antigens. Cell host & microbe, 18 (5). pp. 538-548.

Dawson, Rodney and Diacon, Andreas H. and Everitt, Daniel and van Niekerk, Christo and Donald, Peter R. and Burger, Divan A. and Schall, Robert and Spigelman, Melvin and Conradie, Almari and Eisenach, Kathleen and Venter, Amour and Ive, Prudence and Page-Shipp, Liesl and Variava, Ebrahim and Reither, Klaus and Ntinginya, Nyanda E. and Pym, Alexander and von Groote-Bidlingmaier, Florian and Mendel, Carl M.. (2015) Efficiency and safety of the combination of moxifloxacin, pretomanid (PA-824), and pyrazinamide during the first 8 weeks of antituberculosis treatment : a phase 2b, open-label, partly randomised trial in patients with drug-susceptible or drug-resistant pulmonary tuberculosis. Lancet, Vol. 385, no. 9979. pp. 1738-1747.

Elkon, Ran and Milon, Beatrice and Morrison, Laura and Shah, Manan and Vijayakumar, Sarath and Racherla, Manoj and Leitch, Carmen C. and Silipino, Lorna and Hadi, Shadan and Weiss-Gayet, Michèle and Barras, Emmanuèle and Schmid, Christoph D. and Ait-Lounis, Aouatef and Barnes, Ashley and Song, Yang and Eisenman, David J. and Eliyahu, Efrat and Frolenkov, Gregory I. and Strome, Scott E. and Durand, Bénédicte and Zaghloul, Norann A. and Jones, Sherri M. and Reith, Walter and Hertzano, Ronna. (2015) RFX transcription factors are essential for hearing in mice. Nature communications, 6. p. 8549.

Heinrich, Norbert and Dawson, Rodney and du Bois, Jeannine and Narunsky, Kim and Horwith, Gary and Phipps, Andrew J. and Nacy, Carol A. and Aarnoutse, Rob E. and Boeree, Martin J. and Gillespie, Stephen H. and Venter, Amour and Henne, Sonja and Rachow, Andrea and Phillips, Patrick P. J. and Hoelscher, Michael and Diacon, Andreas H. and Pan African Consortium for the Evaluation of Antituberculosis An, and Pan African Consortium for the Evaluation of Antituberculosis An, . (2015) Early phase evaluation of SQ109 alone and in combination with rifampicin in pulmonary TB patients. The journal of antimicrobial chemotherapy, 70 (5). pp. 1558-1566.

Kroidl, Inge and Clowes, Petra and Reither, Klaus and Mtafya, Bariki and Rojas-Ponce, Gabriel and Ntinginya, Elias N. and Kalomo, Mariam and Minja, Lilian T. and Kowuor, Dickens and Saathoff, Elmar and Kroidl, Arne and Heinrich, Norbert and Maboko, Leonard and Bates, Matthew and O'Grady, Justin and Zumla, Alimuddin and Hoelscher, Michael and Rachow, Andrea. (2015) Performance of urine lipoarabinomannan assays for paediatric tuberculosis in Tanzania. The European respiratory journal, 46 (3). pp. 761-770.

Luisoni, Stefania and Suomalainen, Maarit and Boucke, Karin and Tanner, Lukas B. and Wenk, Markus R. and Guan, Xue Li and Grzybek, Michał and Coskun, Ünal and Greber, Urs F.. (2015) Co-option of membrane wounding enables virus penetration into cells. Cell host & microbe, Vol. 18, H. 1. pp. 75-85.

Luo, Tao and Comas, Iñaki and Luo, Dan and Lu, Bing and Wu, Jie and Wei, Lanhai and Yang, Chongguang and Liu, Qingyun and Gan, Mingyu and Sun, Gang and Shen, Xin and Liu, Feiying and Gagneux, Sebastien and Mei, Jian and Lan, Rushu and Wan, Kanglin and Gao, Qian. (2015) Southern East Asian origin and coexpansion of Mycobacterium tuberculosis Beijing family with Han Chinese. Proceedings of the National Academy of Sciences of the United States of America, Vol. 112, no. 26. pp. 8136-8141.

Melendez, Jaime and van Ginneken, Bram and Maduskar, Pragnya and Philipsen, Rick H. H. M. and Reither, Klaus and Breuninger, Marianne and Adetifa, Ifedayo M. O. and Maane, Rahmatulai and Ayles, Helen and Sanchez, Clara I.. (2015) A novel multiple-instance learning-based approach to computer-aided detection of tuberculosis on chest x-rays. IEEE transactions on medical imaging, Vol. 34, H. 1. pp. 179-192.

Merker, Matthias and Blin, Camille and Mona, Stefano and Duforet-Frebourg, Nicolas and Lecher, Sophie and Willery, Eve and Blum, Michael G. B. and Rüsch-Gerdes, Sabine and Mokrousov, Igor and Aleksic, Eman and Allix-Béguec, Caroline and Antierens, Annick and Augustynowicz-Kopeć, Ewa and Ballif, Marie and Barletta, Francesca and Beck, Hans Peter and Barry, Clifton E. and Bonnet, Maryline and Borroni, Emanuele and Campos-Herrero, Isolina and Cirillo, Daniela and Cox, Helen and Crowe, Suzanne and Crudu, Valeriu and Diel, Roland and Drobniewski, Francis and Fauville-Dufaux, Maryse and Gagneux, Sébastien and Ghebremichael, Solomon and Hanekom, Madeleine and Hoffner, Sven and Jiao, Wei-Wei and Kalon, Stobdan and Kohl, Thomas A. and Kontsevaya, Irina and Lillebæk, Troels and Maeda, Shinji and Nikolayevskyy, Vladyslav and Rasmussen, Michael and Rastogi, Nalin and Samper, Sofia and Sanchez-Padilla, Elisabeth and Savic, Branislava and Shamputa, Isdore Chola and Shen, Adong and Sng, Li-Hwei and Stakenas, Petras and Toit, Kadri and Varaine, Francis and Vukovic, Dragana and Wahl, Céline and Warren, Robin and Supply, Philip and Niemann, Stefan and Wirth, Thierry. (2015) Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineage. Nature genetics, Vol. 47, H. 3. pp. 242-249.

Mhalu, Grace and Hella, Jerry and Doulla, Basra and Mhimbira, Francis and Mtutu, Hawa and Hiza, Helen and Sasamalo, Mohamed and Rutaihwa, Liliana and Rieder, Hans L. and Seimon, Tamsyn and Mutayoba, Beatrice and Weiss, Mitchell G. and Fenner, Lukas. (2015) Do instructional videos on sputum submission result in increased tuberculosis case detection? : a randomized controlled trial. PLoS one, Vol. 10, H. 9 , e0138413.

Molefi, Mooketsi and Chofle, Awilly A. and Molloy, Síle F. and Kalluvya, Samuel and Changalucha, John M. and Cainelli, Francesca and Leeme, Tshepo and Lekwape, Nametso and Goldberg, Drew W. and Haverkamp, Miriam and Bisson, Gregory P. and Perfect, John R. and Letang, Emili and Fenner, Lukas and Meintjes, Graeme and Burton, Rosie and Makadzange, Tariro and Ndhlovu, Chiratidzo E. and Hope, William and Harrison, Thomas S. and Jarvis, Joseph N.. (2015) AMBITION-cm : intermittent high dose AmBisome on a high dose fluconazole backbone for cryptococcal meningitis induction therapy in sub-Saharan Africa : study protocol for a randomized controlled trial. Trials, Vol. 16. p. 276.

Nicol, Mark Patrick and Gnanashanmugam, Devasena and Browning, Renee and Click, Eleanor S. and Cuevas, Luis E. and Detjen, Anne and Graham, Steve M. and Levin, Michael and Makhene, Mamodikoe and Nahid, Payam and Perez-Velez, Carlos M. and Reither, Klaus and Song, Rinn and Spiegel, Hans M. L. and Worrell, Carol and Zar, Heather J. and Walzl, Gerhard. (2015) A blueprint to address research gaps in the development of biomarkers for pediatric tuberculosis. Clinical Infectious Diseases, Vol. 61, H. Suppl. 3 , S164-S172.

Olaru, I. D. and Rachow, A. and Lange, C. and Ntinginya, N. E. and Reither, K. and Hoelscher, M. and Vollrath, O. and Niemann, S.. (2015) Ascertaining in vivo virulence of Mycobacterium tuberculosis lineages in patients in Mbeya, Tanzania. The international journal of tuberculosis and lung disease, Vol. 19, H. 1. pp. 70-73.

Petrone, Linda and Cannas, Angela and Aloi, Francesco and Nsubuga, Martin and Sserumkuma, Joseph and Nazziwa, Ritah Angella and Jugheli, Levan and Lukindo, Tedson and Girardi, Enrico and Reither, Klaus and Goletti, Delia. (2015) Blood or urine IP-10 cannot discriminate between active tuberculosis and respiratory diseases different from tuberculosis in children. BioMed research international, 2015. ID589471.

Reither, Klaus and Jugheli, Levan and Glass, Tracy R. and Sasamalo, Mohamed and Mhimbira, Francis A. and Weetjens, Bart J. and Cox, Christophe and Edwards, Timothy L. and Mulder, Christiaan and Beyene, Negussie W. and Mahoney, Amanda. (2015) Evaluation of giant african pouched rats for detection of pulmonary tuberculosis in patients from a high-endemic setting. PLoS one, Vol. 10, H. 10 , e0135877.

Reither, Klaus and Manyama, Christina and Clowes, Petra and Rachow, Andrea and Mapamba, Daniel and Steiner, Andreas and Ross, Amanda and Mfinanga, Elirehema and Sasamalo, Mohamed and Nsubuga, Martin and Aloi, Francesco and Cirillo, Daniela and Jugheli, Levan and Lwilla, Fred. (2015) Xpert MTB/RIF assay for diagnosis of pulmonary tuberculosis in children : a prospective, multi-centre evaluation. The journal of infection, Vol. 70, H. 4. pp. 392-399.

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Narayanaswamy, Pradeep and Shinde, Sudhirkumar and Sulc, Robert and Kraut, Rachel and Staples, Gregory and Thiam, Chung Hwee and Grimm, Rudolf and Sellergren, Börje and Torta, Federico and Wenk, Markus R.. (2014) Lipidomic "deep profiling" : an enhanced workflow to reveal new molecular species of signaling lipids. Analytical chemistry, Vol. 86, H. 6. pp. 3043-3047.

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Farhat, Maha R. and Shapiro, B. Jesse and Kieser, Karen J. and Sultana, Razvan and Jacobson, Karen R. and Victor, Thomas C. and Warren, Robin M. and Streicher, Elizabeth M. and Calver, Alistair and Sloutsky, Alex and Kaur, Devinder and Posey, Jamie E. and Plikaytis, Bonnie and Oggioni, Marco R. and Gardy, Jennifer L. and Johnston, James C. and Rodrigues, Mabel and Tang, Patrick K. C. and Kato-Maeda, Midori and Borowsky, Mark L. and Muddukrishna, Bhavana and Kreiswirth, Barry N. and Kurepina, Natalia and Galagan, James and Gagneux, Sebastien and Birren, Bruce and Rubin, Eric J. and Lander, Eric S. and Sabeti, Pardis C. and Murray, Megan. (2013) Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis. Nature genetics, Vol. 45, H. 10. pp. 1183-1189.

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Ford, Christopher B. and Shah, Rupal R. and Maeda, Midori Kato and Gagneux, Sebastien and Murray, Megan B. and Cohen, Ted and Johnston, James C. and Gardy, Jennifer and Lipsitch, Marc and Fortune, Sarah M.. (2013) Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis. Nature genetics, Vol. 45, H. 7. pp. 784-790.

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Sánchez-Busó, Leonor and Coscollá, Mireia and Pinto-Carbó, Marta and Catalán, Vicente and González-Candelas, Fernando. (2013) Genetic characterization of Legionella pneumophila isolated from a common watershed in comunidad Valenciana, Spain. PloS one, Vol. 8, H. 4 , e61564.

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Wampande, Eddie M. and Mupere, Ezekiel and Debanne, Sara M. and Asiimwe, Benon B. and Nsereko, Mary and Mayanja, Harriet and Eisenach, Kathleen and Kaplan, Gilla and Boom, Henry W. and Sebastien, Gagneux and Joloba, Moses L.. (2013) Long-term dominance of Mycobacterium tuberculosis Uganda family in peri-urban Kampala-Uganda is not associated with cavitary disease. BMC infectious diseases, Vol. 13 , 484.

de Vos, M. and Müller, B. and Borrell, S. and Black, P. and van Helden, P. and Warren, R. and Gagneux, S. and Victor, T.. (2013) Putative compensatory mutations in the rpoC gene of rifampicin-resistant Mycobacterium tuberculosis are associated with ongoing transmission. Antimicrobial agents and chemotherapy : AAC, Vol. 57, H. 2. pp. 827-832.

Bentley, S. D. and Comas, I. and Bryant, J. M. and Walker, D. and Smith, N. H. and Harris, S. R. and Thurston, S. and Gagneux, S. and Wood, J. and Antonio, M. and Quail, M. A. and Gehre, F. and Adegbola, R. A. and Parkhill, J. and de Jong, B. C.. (2012) The genome of Mycobacterium africanum west African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex. PLoS neglected tropical diseases, Vol. 6, H. 2 , e1552.

Beyene, N. and Mahoney, A. and Cox, C. and Weetjens, B. and Makingi, G. and Mgode, G. and Durgin, A. and Kuipers, D. and Jubitana, M. and Egwaga, S. and Kamara, D. and Lwilla, F. and Mfinanga, S. G. and Kahwa, A. and Machang'u, R. and Kazwala, R. and Reither, K. and Kaufmann, S. H. E. and Poling, A.. (2012) APOPO's tuberculosis research agenda : achievements, challenges and prospects. Tanzania journal of health research, Vol. 14, H. 2. pp. 1-13.

Brites, Daniela and Gagneux, Sebastien. (2012) Old and new selective pressures on Mycobacterium tuberculosis. Infection, genetics and evolution, Vol. 12, H. 4. pp. 678-685.

Comas, Iñaki and Borrell, Sonia and Roetzer, Andreas and Rose, Graham and Malla, Bijaya and Kato-Maeda, Midori and Galagan, James and Niemann, Stefan and Gagneux, Sebastien. (2012) Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes. Nature genetics, Vol. 44, H. 1. pp. 106-110.

Fenner, L. and Egger, M. and Bodmer, T. and Altpeter, E. and Zwahlen, M. and Jaton, K. and Pfyffer, G. E. and Borrell, S. and Dubuis, O. and Bruderer, T. and Siegrist, H. H. and Furrer, H. and Calmy, A. and Fehr, J. and Stalder, J. M. and Ninet, B. and Bottger, E. C. and Gagneux, S.. (2012) Effect of mutation and genetic background on drug resistance in Mycobacterium tuberculosis. Antimicrobial agents and chemotherapy, Vol. 56, H. 6. pp. 3047-3053.

Fenner, L. and Gagneux, S. and Helbling, P. and Battegay, M. and Rieder, H. L. and Pfyffer, G. E. and Zwahlen, M. and Furrer, H. and Siegrist, H. H. and Fehr, J. and Dolina, M. and Calmy, A. and Stucki, D. and Jaton, K. and Janssens, J. P. and Stalder, J. M. and Bodmer, T. and Ninet, B. and Böttger, E. C. and Egger, M.. (2012) Mycobacterium tuberculosis transmission in a country with low tuberculosis incidence : role of immigration and HIV infection. Journal of clinical microbiology, Vol. 50, H. 2. pp. 388-395.

Fenner, L. and Gagneux, S. and Janssens, J. P. and Fehr, J. and Cavassini, M. and Hoffmann, M. and Bernasconi, E. and Schrenzel, J. and Bodmer, T. and Bottger, E. C. and Helbling, P. and Egger, M.. (2012) Tuberculosis in HIV-negative and HIV-infected patients in a low-incidence country : clinical characteristics and treatment outcomes. PLoS one, Vol. 7, H. 3 , e34186.

Gagneux, S.. (2012) Host-pathogen coevolution in human tuberculosis. Philosophical transactions / The Royal Society of London. Biological sciences, Vol. 367, H. 1590. pp. 850-859.

Haraka, F. and Rutaihwa, L. K. and Battegay, M. and Reither, K.. (2012) Mycobacterium intracellulare infection in non-HIV infected patient in a region with a high burden of tuberculosis. BMJ case reports, 8 May 2012. p. 3.

Kato-Maeda, M. and Shanley, C. A. and Ackart, D. and Jarlsberg, L. G. and Shang, S. and Obregon-Henao, A. and Harton, M. and Basaraba, R. J. and Henao-Tamayo, M. and Barrozo, J. C. and Rose, J. and Kawamura, L. M. and Coscolla, M. and Fofanov, V. Y. and Koshinsky, H. and Gagneux, S. and Hopewell, P. C. and Ordway, D. J. and Orme, I. M.. (2012) Beijing sublineages of Mycobacterium tuberculosis differ in pathogenicity in the Guinea pig. Clinical and vaccine immunology, Vol. 19, H. 8. pp. 1227-1237.

Luo, Tao and Yang, Chongguang and Gagneux, Sebastien and Gicquel, Brigitte and Jian, Mei and Gao, Qian. (2012) Combination of single nucleotide polymorphism and variable-number tandem repeats for genotyping a homogenous population of Mycobacterium tuberculosis Beijing strains in China. Journal of clinical microbiology, Vol. 50, H. 3. pp. 633-639.

Mahoney, Amanda and Weetjens, Bart J. and Cox, Christophe and Beyene, Negussie and Reither, Klaus and Makingi, George and Jubitana, Maureen and Kazwala, Rudovick and Mfinanga, Godfrey S. and Kahwa, Amos and Durgin, Amy and Poling, Alan. (2012) Pouched rats' detection of tuberculosis in human sputum : comparison to culturing and polymerase chain reaction. Tuberculosis research and treatment, Vol. 2012 , 716989.

Malla, B. and Stucki, D. and Borrell, S. and Feldmann, J. and Maharjan, B. and Shrestha, B. and Fenner, L. and Gagneux, S.. (2012) First insights into the phylogenetic diversity of Mycobacterium tuberculosis in Nepal. PLoS one, Vol. 7, H. 12 , e52297.

McEvoy, C. R. and Cloete, R. and Müller, B. and Schurch, A. C. and van Helden, P. D. and Gagneux, S. and Warren, R. M. and Gey van Pittius, N. C.. (2012) Comparative analysis of Mycobacterium tuberculosis pe and ppe genes reveals high sequence variation and an apparent absence of selective constraints. PLoS one, Vol. 7, H. 4 , e30593.

Ntinginya, E. N. and Squire, S. B. and Millington, K. A. and Mtafya, B. and Saathoff, E. and Heinrich, N. and Rojas-Ponce, G. and Kowuor, D. and Maboko, L. and Reither, K. and Clowes, P. and Hoelscher, M. and Rachow, A.. (2012) Performance of the Xpert® MTB/RIF assay in an active case-finding strategy : a pilot study from Tanzania. The international journal of tuberculosis and lung disease : the official journal of the International Union Against Tuberculosis and Lung Disease, Vol. 16, H. 11. pp. 1468-1470.

Rachow, A. and Clowes, P. and Saathoff, E. and Mtafya, B. and Michael, E. and Ntinginya, E. N. and Kowour, D. and Rojas-Ponce, G. and Kroidl, A. and Maboko, L. and Heinrich, N. and Reither, K. and Hoelscher, M.. (2012) Increased and expedited case detection by Xpert MTB/RIF assay in childhood tuberculosis : a prospective cohort study. Clinical Infectious Diseases, Vol. 54, H. 10. pp. 1388-1396.

Stucki, D. and Malla, B. and Hostettler, S. and Huna, T. and Feldmann, J. and Yeboah-Manu, D. and Borrell, S. and Fenner, L. and Comas, I. and Coscolla, M. and Gagneux, S.. (2012) Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages. PLoS one, Vol. 7, H. 7 , e41253.

Weiner, B. and Gomez, J. and Victor, T. C. and Warren, R. M. and Sloutsky, A. and Plikaytis, B. B. and Posey, J. E. and van Helden, P. D. and Gey van Pittius, N. C. and Koehrsen, M. and Sisk, P. and Stolte, C. and White, J. and Gagneux, S. and Birren, B. and Hung, D. and Murray, M. and Galagan, J.. (2012) Independent large scale duplications in multiple M. tuberculosis lineages overlapping the same genomic region. PLoS one, Vol. 7, H. 2 , e26038.

Borrell, S. and Gagneux, S.. (2011) Strain diversity, epistasis and the evolution of drug resistance in Mycobacterium tuberculosis. Clinical microbiology and infection : CMI : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, Vol. 17, H. 6. pp. 815-820.

Comas, I. and Gagneux, S.. (2011) A role for systems epidemiology in tuberculosis research. Trends in microbiology : virulence, infection and pathogenesis, Vol. 19, H. 10. pp. 492-500.

Coscolla, M. and Comas, I. and Gonzalez-Candelas, F.. (2011) Quantifying nonvertical inheritance in the evolution of Legionella pneumophila. Molecular biology and evolution, 28 (2). pp. 985-1001.

Fenner, Lukas and Malla, Bijaya and Ninet, Béatrice and Dubuis, Olivier and Stucki, David and Borrell, Sonia and Huna, Thembela and Bodmer, Thomas and Egger, Matthias and Gagneux, Sebastien. (2011) "Pseudo-Beijing" : evidence for convergent evolution in the direct repeat region of Mycobacterium tuberculosis. PloS one, Vol. 6, H. 9 , e24737.

Kato-Maeda M., and Gagneux, S. and Flores, L. L. and Kim, E. Y. and Small, P. M. and Desmond, E. P. and Hopewell, P. C.. (2011) Strain classification of Mycobacterium tuberculosis : congruence between large sequence polymorphisms and spoligotypes. The international journal of tuberculosis and lung disease : the official journal of the International Union Against Tuberculosis and Lung Disease, Vol. 15, H. 1. pp. 131-133.

Portevin, Damien and Gagneux, Sébastien and Comas, Iñaki and Young, Douglas. (2011) Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages. PLoS Pathogens, Vol. 7, H. 3 , e1001307.

Rachow, A. and Zumla, A. and Heinrich, N. and Rojas-Ponce G., and Mtafya, B. and Reither, K. and Ntinginya, E. N. and O'Grady J., and Huggett, J. and Dheda, K. and Boehme, C. and Perkins, M. and Saathoff, E. and Hoelscher, M.. (2011) Rapid and accurate detection of Mycobacterium tuberculosis in sputum samples by Cepheid Xpert MTB/RIF assay : a clinical validation study. PLoS one, Vol. 6, H. 6 , e20458.

Rey-Jurado, Emma and Tudó, Griselda and Borrell, Sònia and Alcaide, Fernando and Coll, Pere and Español, Montserrat and Martín-Casabona, Núria and Mick, Virginie and Montemayor, Michel and Moure, Raquel and Salvadó, Margarita and Vicente, Eva and González-Martín, Julià. (2011) Impaired fitness of Mycobacterium tuberculosis resistant isolates in a cell culture model of murine macrophages. The journal of antimicrobial chemotherapy, 66 (10). pp. 2277-2280.

Sherman, David R. and Gagneux, Sebastien. (2011) Estimating the mutation rate of Mycobacterium tuberculosis during infection. Nature genetics, Vol. 43, H. 5. pp. 400-401.

Yeboah-Manu D., and Asante-Poku A., and Bodmer, T. and Stucki, D. and Koram, K. and Bonsu, F. and Pluschke, G. and Gagneux, S.. (2011) Genotypic diversity and drug susceptibility patterns among M. tuberculosis complex isolates from South-Western Ghana. PLoS one, Vol. 6, H. 7 , e21906.

Comas, Iñaki and Chakravartti, Jaidip and Small, Peter M. and Galagan, James and Niemann, Stefan and Kremer, Kristin and Ernst, Joel D. and Gagneux, Sébastien. (2010) Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved. Nature genetics, 42 (6). pp. 498-503.

Coscolla, M. and Gagneux, S.. (2010) Does M. tuberculosis genomic diversity explain disease diversity? Drug discovery today. Disease mechanisms, Vol. 7, H. 1 , e43-e59.

Gagneux, S. and Brennan, M.. (2010) Strain and antigen variation in Mycobacterium tuberculosis : implications for the development of new tools for tuberculosis. In: >>The<< art and science of tuberculosis vaccine development. Shah Alam, pp. 130-147.

Nahid, P. and Bliven, E. E. and Kim, E. Y. and Mac Kenzie W. R., and Stout, J. E. and Diem, L. and Johnson, J. L. and Gagneux, S. and Hopewell, P. C. and Kato-Maeda M., . (2010) Influence of M. tuberculosis lineage variability within a clinical trial for pulmonary tuberculosis. PLoS one, Vol. 5, H. 5 , e10753.

de Jong B. C., and Antonio, M. and Gagneux, S.. (2010) Mycobacterium africanum : review of an important cause of human tuberculosis in West Africa. PLoS neglected tropical diseases, Vol. 4, H. 9 , e744.

Borrell, S. and Gagneux, S.. (2009) Infectiousness, reproductive fitness and evolution of drug-resistant Mycobacterium tuberculosis. The international journal of tuberculosis and lung disease, 13 (12). pp. 1456-1466.

Leimkugel, Julia and Forgor, Abudulai Adams and Dangy, Jean-Pierre and Pflüger, Valentin and Gagneux, Sebastien and Hodgson, Abraham and Pluschke, Gerd. (2007) Genetic diversification of Neisseria meningitidis during waves of colonization and disease in the meningitis belt of sub-Saharan Africa. Vaccine : the official journal of the International Society for Vaccines, 25 (1). A18-A23.

Leimkugel, Julia and Hodgson, Abraham and Forgor, Abudulai Adams and Pflüger, Valentin and Dangy, Jean-Pierre and Smith, Tom and Achtman, Mark and Gagneux, Sébastien and Pluschke, Gerd. (2007) Clonal waves of Neisseria colonisation and disease in the African meningitis belt : eight- year longitudinal study in northern Ghana. PLoS medicine, Vol. 4, H. 3 , e101.

Forgor, Abdulai Adams and Leimkugel, Julia and Hodgson, Abraham and Bugri, Akalifa and Dangy, Jean-Pierre and Gagneux, Sébastien and Smith, Tom and Pluschke, Gerd. (2005) Emergence of W135 meningococcal meningitis in Ghana. Tropical medicine and international health : TM & IH : a European journal, 10 (12). pp. 1229-1234.

Leimkugel, Julia and Adams Forgor, Abudulai and Gagneux, Sébastien and Pflüger, Valentin and Flierl, Christian and Awine, Elizabeth and Naegeli, Martin and Dangy, Jean-Pierre and Smith, Tom and Hodgson, Abraham and Pluschke, Gerd. (2005) An outbreak of serotype 1 Streptococcus pneumoniae meningitis in northern Ghana with features that are characteristic of Neisseria meningitidis meningitis epidemics. The Journal of Infectious Diseases, Vol. 192, H. 2. pp. 192-199.

Gagneux, Sébastien and Wirth, Thierry and Hodgson, Abraham and Ehrhard, Ingrid and Morelli, Giovanna and Kriz, Paula and Genton, Blaise and Smith, Tom and Binka, Fred and Pluschke, Gerd and Achtman, Mark. (2002) Clonal groupings in serogroup X Neisseria meningitidis. Emerging Infectious Diseases, Vol. 8, H. 5. pp. 462-466.

Gagneux, Sébastien P. and Hodgson, Abraham and Smith, Tom A. and Wirth, Thierry and Ehrhard, Ingrid and Morelli, Giovanna and Genton, Blaise and Binka, Fred N. and Achtman, Mark and Pluschke, Gerd. (2002) Prospective study of a serogroup X Neisseria meningitidis outbreak in northern Ghana. The Journal of Infectious Diseases, Vol. 185, H. 5. pp. 618-626.

Hodgson, A. and Smith, T. and Gagneux, S. and Adjuik, M. and Pluschke, G. and Mensah, N. K. and Binka, F. and Genton, B.. (2001) Risk factors for meningococcal meningitis in northern Ghana. Transactions of The Royal Society of Tropical Medicine and Hygiene, Vol. 95, H. 5. pp. 477-480.

Hodgson, A. and Smith, T. and Gagneux, S. and Akumah, I. and Adjuik, M. and Pluschke, G. and Binka, F. and Genton, B.. (2001) Survival and sequelae of meningococcal meningitis in Ghana. International Journal of Epidemiology, Vol. 30, H. 6. pp. 1440-1446.

Zhu, P. and van der Ende, A. and Falush, D. and Brieske, N. and Morelli, G. and Linz, B. and Popovic, T. and Schuurman, I. G. and Adegbola, R. A. and Zurth, K. and Gagneux, S. and Platonov, A. E. and Riou, J. Y. and Caugant, D. A. and Nicolas, P. and Achtman, M.. (2001) Fit genotypes and escape variants of subgroup III Neisseria meningitidis during three pandemics of epidemic meningitis. Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, H. 9. pp. 5234-5239.

Gagneux, S. and Hodgson, A. and Ehrhard, I. and Morelli, G. and Genton, B. and Smith, T. and Tanner, M. and Binka, F. and Achtman, M. and Pluschke, G.. (2000) Microheterogeneity of serogroup A (subgroup III) Neisseria meningitidis during an outbreak in northern Ghana. Tropical medicine and international health : TM & IH : a European journal, 5 (4). pp. 280-287.

No

Asante-Poku, Adwoa. Genotypic and epidemiological characterization of Mycobacterium tuberculosis complex in Ghana. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Stucki, David. Transmission and evolution of "Mycobacterium tuberculosis" studied by whole genome sequencing and single nucleotide polymorphism-typing. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Malla, Bijaya. Molecular epidemiology of "mycobacterium tuberculosis" in Nepal. 2013, Doctoral Thesis, University of Basel, Faculty of Science.