Items where Division is "05 Faculty of Science > Departement Umweltwissenschaften > Integrative Biologie > Evolutionary Biology (Ebert)"

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Altermatt, Florian and Ebert, Dieter. (2016) Reduced flight-to-light behaviour of moth populations exposed to long-term urban light pollution. Biology Letters, 12 (4). p. 20160111.

Arbore, R. and Andras, J. P. and Routtu, J. and Ebert, D.. (2016) Ecological genetics of sediment browsing behaviour in a planktonic crustacean. Journal of Evolutionary Biology, 29 (10). pp. 1999-2009.

Ayé, Raffael and Roth, Tobias and Stalling, Thomas. (2014) Paddyfield Pipit (Anthus rufulus) in south-eastern Iran: a species new to the Middle East. Zoology in the Middle East, 60 (2). pp. 183-185.

Andras, J. P. and Ebert, D.. (2013) A novel approach to parasite population genetics: experimental infection reveals geographic differentiation, recombination and host-mediated population structure in Pasteuria ramosa, a bacterial parasite of Daphnia. Molecular Ecology, 22 (4). pp. 972-986.

Ayé, R. and Roth, T. and Saiam, I. S. and Stalling, T.. (2012) Sistan (Afghan) Scrub Sparrow Passer (moabiticus) yatii: Notes on Common Name, Status and Threats. Podoces, Vol. 7, H. 1/2. pp. 54-58.

Ayé, R. and Schweizer, M. and Roth, T.. (2012) Birds of Central Asia : Kazakhstan, Turkmenistan, Uzbekistan, Kyrgyzstan, Tajikistan and Afghanistan. Helm field guides. London.

Altermatt, F. and Pajunen, V. I. and Ebert, D.. (2010) Populations in small, ephemeral habitat patches may drive dynamics in a Daphnia magna metapopulation. Ecology, Vol. 91, Nr. 10. pp. 2975-2982.

Altermatt, F. and Baumeyer, A. and Ebert, D.. (2009) Experimental evidence for male biased flight-to-light behavior in two moth species. Entomologia Experimentalis et Applicata, 130 (3). pp. 259-265.

Altermatt, F. and Pajunen, I. and Ebert, D.. (2009) Desiccation of rock pool habitats and its influence onpopulation persistence in a Daphnia metacommunity. PLoS one, Vol. 4, H. 3 , e4703.

Altermatt, F. and Ebert, D.. (2008) Genetic diversity of Daphnia magna populations enhances resistance to parasites. Ecology Letters, 11 (9). pp. 918-928.

Altermatt, F. and Ebert, D.. (2008) The influence of pool volume and summer desiccation on the production of the resting and dispersal stage in a Daphnia metapopulation. Oecologia, 157 (3). pp. 441-452.

Altermatt, F. and Pajunen, V. I. and Ebert, D.. (2008) Climate change affects colonization dynamics in a metacommunity of three Daphnia species. Global Change Biology, 14 (6). pp. 1209-1220.

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Brites, D. and Brena, C. and Ebert, D. and Du Pasquier, L.. (2013) More than one way to produce protein diversity: duplication and limited alternative splicing of an adhesion molecule gene in basal arthropods. Evolution, 67 (10). pp. 2999-3011.

Brites, Daniela. Evolution and expression of the highly variable cell adhesion molecule Dscam in the crustacean Daphnia and other arthropods. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Balmer, Oliver and Ciofi, Claudio and Galbraith, David A. and Swingland, Ian R. and Zug, George R. and Caccone, Adalgisa. (2011) Population genetic structure of Aldabra giant tortoises. Journal of Heredity, 102 (1). pp. 29-37.

Ben-Ami, F. and Rigaud, T. and Ebert, D.. (2011) The expression of virulence during double infections by different parasites with conflicting host exploitation and transmission strategies. Journal of Evolutionary Biology, 24 (6). pp. 1307-1316.

Brites, D. and Encinas-Viso, F. and Ebert, D. and Du Pasquier, L. and Haag, C. R.. (2011) Population genetics of duplicated alternatively spliced exons of the dscam gene in Daphnia and Drosophila. PLoS one, Vol. 6, H. 12 , e27947.

Bühler, Christoph and Roth, Tobias. (2011) Spread of common species results in local-scale floristic homogenization in grassland of Switzerland. Diversity & distributions, Vol. 17, H. 6. pp. 1089-1098.

Burki, Simone and Roth, Tobias and Robin, Klaus and Weber, Darius. (2010) Lure sticks as a method to detect pine martens Martes martes. Acta theriologica, 55 (3). pp. 223-230.

Ben-Ami, F. and Ebert, D. and Regoes, R.. (2010) Pathogen dose infectivity curves as a method to analyze the distribution of host susceptibility : a quantitative assessment of maternal effects after food stress and pathogen exposure. The American naturalist, Vol. 175. pp. 106-115.

Bieger, A. and Ebert, D.. (2009) Expression of parasite virulence at different host population densities under natural conditions. Oecologia, Vol. 160, H. 2. pp. 247-255.

Ben-Ami, F. and Mouton, L. and Ebert, D.. (2008) The effects of multiple infections on the expression and evolution of virulence in a Daphnia-endoparasite system. Evolution, 62 (7). pp. 1700-1711.

Ben-Ami, Frida and Regoes, Roland R. and Ebert, Dieter. (2008) A quantitative test of the relationship between parasite dose and infection probability across different host-parasite combinations. Proceedings of the Royal Society. Series B, Biological Sciences, 275 (1636). pp. 853-859.

Brites, D. and McTaggart, S. and Morris, K. and Anderson, J. and Thomas, K. and Colson, I. and Fabbro, T. and Little, T. J. and Ebert, D. and Du Pasquier, L.. (2008) The Dscam homologue of the crustacean Daphnia is diversified by alternative splicing like in insects. Molecular biology and evolution, 25 (7). pp. 1429-1439.

Bull, J. J. and Ebert, D.. (2008) Invasion thresholds and the evolution of nonequilibrium virulence. Evolutionary Applications, 1 (1). pp. 172-182.

Balmer, O.. (2002) Species lists in ecology and conservation : abundances matter. Conservation biology, 16 (4). pp. 1160-1161.

Balmer, O. and Erhardt, A.. (2000) Gesteigerte Tagfalterdiversität durch 10-jährige Verbrachung von Magerweiden im Nordwestschweizer Jura. Mitteilungen der Deutschen Gesellschaft für allgemeine und angewandte Entomologie, Bd. 12. pp. 259-262.

Balmer, Oliver and Erhardt, Andreas. (2000) Consequences of succession on extensively grazed grasslands for Central European butterfly communities : rethinking conservation practices. Conservation biology, 14 (3). pp. 746-757.

Balmer, Oliver. (1999) Butterfly fauna of different successional stages of extensively grazed calcareous grasslands in the Jura mountains. Mitteilungen der Schweizerischen Entomologischen Gesellschaft, Vol. 72, H. 3-4. pp. 303-314.

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Clerc, Melanie and Ebert, Dieter and Hall, Matthew D.. (2015) Expression of parasite genetic variation changes over the course of infection: implications of within-host dynamics for the evolution of virulence. Proceedings of the Royal Society. Series B, Biological sciences, 282 (1804). p. 20142820.

Chipman, Ariel D. and Ferrier, David E. K. and Brena, Carlo and Qu, Jiaxin and Hughes, Daniel S. T. and Schröder, Reinhard and Torres-Oliva, Montserrat and Znassi, Nadia and Jiang, Huaiyang and Almeida, Francisca C. and Alonso, Claudio R. and Apostolou, Zivkos and Aqrawi, Peshtewani and Arthur, Wallace and Barna, Jennifer C. J. and Blankenburg, Kerstin P. and Brites, Daniela and Capella-Gutiérrez, Salvador and Coyle, Marcus and Dearden, Peter K. and Du Pasquier, Louis and Duncan, Elizabeth J. and Ebert, Dieter and Eibner, Cornelius and Erikson, Galina and Evans, Peter D. and Extavour, Cassandra G. and Francisco, Liezl and Gabaldón, Toni and Gillis, William J. and Goodwin-Horn, Elizabeth A. and Green, Jack E. and Griffiths-Jones, Sam and Grimmelikhuijzen, Cornelis J. P. and Gubbala, Sai and Guigó, Roderic and Han, Yi and Hauser, Frank and Havlak, Paul and Hayden, Luke and Helbing, Sophie and Holder, Michael and Hui, Jerome H. L. and Hunn, Julia P. and Hunnekuhl, Vera S. and Jackson, LaRonda and Javaid, Mehwish and Jhangiani, Shalini N. and Jiggins, Francis M. and Jones, Tamsin E. and Kaiser, Tobias S. and Kalra, Divya and Kenny, Nathan J. and Korchina, Viktoriya and Kovar, Christie L. and Kraus, F. Bernhard and Lapraz, François and Lee, Sandra L. and Lv, Jie and Mandapat, Christigale and Manning, Gerard and Mariotti, Marco and Mata, Robert and Mathew, Tittu and Neumann, Tobias and Newsham, Irene and Ngo, Dinh N. and Ninova, Maria and Okwuonu, Geoffrey and Ongeri, Fiona and Palmer, William J. and Patil, Shobha and Patraquim, Pedro and Pham, Christopher and Pu, Ling-Ling and Putman, Nicholas H. and Rabouille, Catherine and Ramos, Olivia Mendivil and Rhodes, Adelaide C. and Robertson, Helen E. and Robertson, Hugh M. and Ronshaugen, Matthew and Rozas, Julio and Saada, Nehad and Sánchez-Gracia, Alejandro and Scherer, Steven E. and Schurko, Andrew M. and Siggens, Kenneth W. and Simmons, DeNard and Stief, Anna and Stolle, Eckart and Telford, Maximilian J. and Tessmar-Raible, Kristin and Thornton, Rebecca and van der Zee, Maurijn and von Haeseler, Arndt and Williams, James M. and Willis, Judith H. and Wu, Yuanqing and Zou, Xiaoyan and Lawson, Daniel and Muzny, Donna M. and Worley, Kim C. and Gibbs, Richard A. and Akam, Michael and Richards, Stephen. (2014) The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede strigamia maritima. PLoS biology, 12 (11). e1002005.

Chevillat, V. and Balmer, O. and Birrer, S. and Doppler, V. and Graf, R. and Jenny, M. and Pfiffner, L. and Rudmann, C. and Zellweger-Fischer, J.. (2012) Gesamtbetriebliche Beratung steigert Qualität und Quantität von Ökoausgleichsflächen. Agrarforschung Schweiz, Bd. 3, H. 2. pp. 104-111.

Colson, I. and Du Pasquier, L. and Ebert, D.. (2009) Intragenic tandem repeats in Daphnia magna: structure, function and distribution. BMC Research Notes, Vol. 2 , 206, 6 S..

Corradi, N. and Haag, K. L. and Pombert, J. F. and Ebert, D. and Keeling, P. J.. (2009) Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome biology, Vol. 10, H. 10 , R106.

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Duneau, David and Ebert, Dieter and Du Pasquier, Louis. (2016) Infections by Pasteuria do not protect its natural host Daphnia magna from subsequent infections. Developmental and comparative immunology, 57. pp. 120-125.

Dukić, Marinela and Berner, Daniel and Roesti, Marius and Haag, Christoph R. and Ebert, Dieter. (2016) A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna. BMC genetics, 17 (1). p. 137.

Duneau, D. and Ebert, D.. (2012) Host sexual dimorphism and parasite adaptation. PLoS biology, Vol. 10, H. 2 , e1001271.

Duneau, D. and Ebert, D.. (2012) The role of moulting in parasite defense. Proceedings of the Royal Society. Series B, Biological Sciences, 279 (1740). pp. 3049-3054.

Duneau, D. and Luijckx, P. and Ben-Ami, F. and Laforsch, C. and Ebert, D.. (2011) Resolving the infection process reveals striking differences in the contribution of environment, genetics and phylogeny to host-parasite interactions. BMC biology, Vol. 9 , Art. 11.

Duneau, David. Evolutionary and proximate mechanisms shaping host-parasite interactions : the case of "Daphnia magna" and its natural bacterial parasite "Pasteuria ramosa". 2011, Doctoral Thesis, University of Basel, Faculty of Science.

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Ebert, Dieter and Duneau, David and Hall, Matthew D. and Luijckx, Pepijn and Andras, Jason P. and Du Pasquier, Louis and Ben-Ami, Frida. (2016) A Population Biology Perspective on the Stepwise Infection Process of the Bacterial Pathogen Pasteuria ramosa in Daphnia. Advances in Parasitology , 91. pp. 265-310.

Ebert, Dieter. (2013) The epidemiology and evolution of symbionts with mixed-mode Transmission. Annual Review of Ecology, Evolution, and Systematics, 44. pp. 623-643.

Ebert, Dieter and Hottinger, Jürgen W. and Pajunen, V. Ilmari. (2013) Unsuitable habitat patches lead to severe underestimation of dynamics and gene flow in a zooplankton metapopulation. The Journal of Animal Ecology, 82 (4). pp. 759-769.

Ebert, Dieter. (2011) A genome for the environment. Science, 331 (6017). pp. 539-540.

Ebert, D.. (2008) Host-parasite coevolution : insights from the Daphnia-parasite model system. Current Opinion in Microbiology, 11 (3). pp. 290-301.

Ebert, D.. (2005) Ecology, epidemiology, and evolution of parasitism in daphnia. Bethesda.

Ebert, D. and Haag, C. and Kirkpatrick, M. and Riek, M. and Hottinger, J. W. and Pajunen, V. I.. (2002) A selective advantage to immigrant genes in a Daphnia metapopulation. Science, 295. pp. 485-488.

Ebert, D. and Jacobs, J.. (1991) Differences in life history and aging in two clonal groups of Daphnia cucullata Sars (Crustacea: Cladocera). Hydrobiologia, Vol. 225. pp. 245-253.

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Fields, Peter D. and Reisser, Céline and Dukić, Marinela and Haag, Christoph R. and Ebert, Dieter. (2015) Genes mirror geography in Daphnia magna. Molecular ecology, 24 (17). pp. 4521-4536.

Frost, P. C. and Ebert, D. and Larson, J. H. and Marcus, M. A. and Wagner, N. D. and Zalewski, A.. (2010) Transgenerational effects of poor elemental food quality on an aquatic invertebrate. Oecologia, 162 (4). pp. 865-872.

Frost, P. C. and Ebert, D. and Smith, V. H.. (2008) Bacterial infection changes the elemental composition of Daphnia magna. The journal of animal ecology, Vol. 77, H. 6. pp. 1265-1272.

Frost, P. C. and Ebert, D. and Smith, V. H.. (2008) Responses of a bacterial pathogen to phosphorus limitation of its aquatic invertebrate host. Ecology, 89, Nr. 2. pp. 313-318.

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Ganz, H. and Ebert, D.. (2010) Benefits of host genetic diversity for resistance to infection depend on parasite diversity. Ecology, Vol. 91. pp. 1263-1268.

Gaba, S. and Ebert, D.. (2009) Time-shift experiments as a tool to study antagonistic coevolution. Trends in Ecology & Evolution, 24 (4). pp. 226-232.

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Haag, K. L. and James, T. Y. and Pombert, J. F. and Larsson, R. and Schaer, T. M. M. and Refardt, D. and Ebert, D.. (2014) Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites. Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, no. 43. pp. 15480-15485.

Haag, K. L. and Sheikh-Jabbari, E. and Ben-Ami, F. and Ebert, D.. (2013) Microsatellite and single-nucleotide polymorphisms indicate recurrent transitions to asexuality in a microsporidian parasite. Journal of Evolutionary Biology, 26 (5). pp. 1117-1128.

Haag, Karen L. and Traunecker, Emmanuel and Ebert, Dieter. (2013) Single-nucleotide polymorphisms of two closely related microsporidian parasites suggest a clonal population expansion after the last glaciation. Molecular Ecology, 22 (2). pp. 314-326.

Hall, Matthew D. and Ebert, Dieter. (2013) The genetics of infectious disease susceptibility: has the evidence for epistasis been overestimated? BMC biology, Vol. 11 , Art. 79.

Hall, Matthew D. and Vettiger, Andrea and Ebert, Dieter. (2013) Interactions between environmental stressors: the influence of salinity on host-parasite interactions between Daphnia magna and Pasteuria ramosa. Oecologia, 171 (4). pp. 789-796.

Hall, M. D. and Ebert, D.. (2012) Disentangling the influence of parasite genotype, host genotype and maternal environment on different stages of bacterial infection in Daphnia magna. Proceedings of the Royal Society. Series B, Biological sciences, 279 (1741). pp. 3176-3183.

Huwyler, S. and Plattner, M. and Roth, T.. (2012) Modellierung der Tagfaltervielfalt im Schweizer Alpenraum = Modelling butterfly richness in the Swiss Alps : mehr als ein Drittel der Tagfalter-Hot-Spots liegt in gesetzlich geschützten Trockenwiesen : more than a third of the butterfly hotspots coincide with legally protected dry grasslands. Natur und Landschaft, Jg. 87, H. 7. pp. 298-304.

Haag, K. L. and Larsson, J. I. R. and Refardt, D. and Ebert, D.. (2011) Cytological and molecular description of Hamiltosporidium tvaerminnensis gen. et sp. nov., a microsporidian parasite of Daphnia magna, and establishment of Hamiltosporidium magnivora comb. nov. Parasitology, Vol. 138, H. 4. pp. 447-462.

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Janicke, Tim. Sexual selection and sex allocation in a simultaneous hermaphrodite. 2010, Doctoral Thesis, University of Basel, Faculty of Science.

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Korner-Nievergelt, Fränzi and Behr, Oliver and Brinkmann, Robert and Etterson, Matthew A. and Huso, Manuela M. P. and Dalthorp, Dan and Korner-Nievergelt, Pius and Roth, Tobias and Niermann, Ivo. (2015) Mortality estimation from carcass searches using the R-package carcass — a tutorial. Wildlife Biology, 21 (1). pp. 30-43.

Korner-Nievergelt, Fränzi and Roth, Tobias and von Felten, Stefanie and Guélat, Jérôme and Almasi, Bettina and Korner-Nievergelt, Pius. (2015) Bayesian data analysis in ecology using linear models with R, BUGS, and Stan. Amsterdam.

Kawecki, T. J. and Lenski, R. E. and Ebert, D. and Hollis, B. and Olivieri, I. and Whitlock, M. C.. (2012) Experimental evolution. Trends in Ecology & Evolution, 27 (10). pp. 547-560.

Kawecki, T. J. and Lenski, R. E. and Ebert, D. and Hollis, B. and Olivieri, I. and Whitlock, M. C.. (2012) The value of complementary approaches in evolutionary research: reply to Magalhães and Matos. Trends in Ecology & Evolution, 27 (12). pp. 650-651.

Keeling, P. J. and Corradi, N. and Morrison, H. G. and Haag, K. L. and Ebert, D. and Weiss, L. M. and Akiyoshi, D. E. and Tzipori, S.. (2010) The reduced genome of the parasitic Microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism. Genome biology and evolution, Vol. 2. pp. 304-309.

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Lang, Andreas and Bühler, Christoph and Dolek, Matthias and Roth, Tobias and Züghart, Wiebke. (2016) Estimating sampling efficiency of diurnal Lepidoptera in farmland. Journal of Insect Conservation, 20 (1). pp. 35-48.

Lange, Benjamin and Kaufmann, Andrea Patricia and Ebert, Dieter. (2015) Genetic, ecological and geographic covariables explaining host range and specificity of a microsporidian parasite. The journal of animal ecology, 84 (6). pp. 1711-1719.

Lange, B. and Reuter, M. and Ebert, D. and Muylaert, K. and Decaestecker, E.. (2014) Diet quality determines interspecific parasite interactions in host populations. Ecology and evolution, Vol. 4, H. 15. pp. 3093-3102.

Luijckx, P. and Duneau, D. and Andras, J. P. and Ebert, D.. (2014) Cross-species infection trials reveal cryptic parasite varieties and a putative polymorphism shared among host species. Evolution, 68 (2). pp. 577-586.

Luijckx, Pepijn and Fienberg, Harris and Duneau, David and Ebert, Dieter. (2013) A matching-allele model explains host resistance to parasites. Current Biology, 23 (12). pp. 1085-1088.

Le Codiac, Marion and Simon, Marianne and Marchetti, Anna and Ebert, Dieter and Cosson, Pierre. (2012) Daphnia magna, a host to evaluate bacterial virulence. Applied and Environmental Microbiology, 78. pp. 593-595.

Luijckx, Pepijn. Host specificity and genetics of host resistance in the "Daphnia-Pasteuria" host-parasite system. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Luijckx P., Fienberg H. and Duneau D., Ebert D.. (2012) Resistance to a bacterial parasite in the crustacean Daphnia magna shows Mendelian segregation with dominance. Heredity, 108 (5). pp. 547-551.

Lass, S. and Hottinger, J. W. and Fabbro, T. and Ebert, D.. (2011) Converging seasonal prevalence dynamics in experimental epidemics. BMC ecology, Vol. 11 , 14.

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Mushegian, Alexandra A. and Ebert, Dieter. (2016) Rethinking "mutualism" in diverse host-symbiont communities. Bioessays, 38 (1). pp. 100-108.

Metzger, César M. J. A. and Luijckx, Pepijn and Bento, Gilberto and Mariadassou, Mahendra and Ebert, Dieter. (2016) The Red Queen lives: Epistasis between linked resistance loci. Evolution, 70 (2). pp. 480-487.

Michel, Jessica and Ebert, Dieter and Hall, Matthew D.. (2016) The trans-generational impact of population density signals on host-parasite interactions. BMC Evolutionary Biology, 16 (1). p. 254.

Mushegian, Alexandra A. and Burcklen, Elodie and Schär, Tobias M. M. and Ebert, Dieter. (2016) Temperature-dependent benefits of bacterial exposure in embryonic development of Daphnia magna resting eggs. Journal of Experimental Biology , 219 (6). pp. 897-904.

Mariadassou, Mahendra and Pichon, Samuel and Ebert, Dieter. (2015) Microbial ecosystems are dominated by specialist taxa. Ecology letters, 18 (9). pp. 974-982.

Metzger, César. Specificity, genetics of resistance and eco-immunology in Daphnia-microparasite interacions. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Mennerat, A. and Hamre, L. and Ebert, D. and Nilsen, F. and Da Vidova, M. and Skorping, A.. (2012) Life history and virulence are linked in the ectoparasitic salmon louse Lepeophtheirus salmonis. Journal of Evolutionary Biology, 25 (5). pp. 856-861.

McElroy, Kerensa and Mouton, Laurence and Du Pasquier, Louis and Qi, Weihong and Ebert, Dieter . (2011) Characterisation of a large family of polymorphic collagen-like proteins in the endospore-forming bacterium Pasteuria ramosa. Research in Microbiology, 162 (7). pp. 701-714.

Mennerat, A. and Nilsen, F. and Ebert, D. and Skorping, A.. (2010) Intensive farming: bevolutionary implications for parasites and pathogens. Evolutionary biology, Vol. 37, H. 2/3. pp. 59-67.

Mouton, L. and Traunecker, E. and McElroy, K. and Du Pasquier, L. and Ebert, D.. (2009) Identification of a polymorphic collagen-like protein in the crustacean bacteria Pasteuria ramosa. Research in microbiology, Vol. 160. pp. 792-799.

Mouton, L. and Ebert, D.. (2008) Variable-number-of-tandem-repeats analysis of genetic diversity in Pasteuria ramosa. Current Microbiology, Vol. 56, H. 5. pp. 447-452.

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Orsini, Luisa and Gilbert, Donald and Podicheti, Ram and Jansen, Mieke and Brown, James B. and Solari, Omid Shams and Spanier, Katina I. and Colbourne, John K. and Rush, Douglas and Decaestecker, Ellen and Asselman, Jana and De Schamphelaere, Karel A. C. and Ebert, Dieter and Haag, Christoph R. and Kvist, Jouni and Laforsch, Christian and Petrusek, Adam and Beckerman, Andrew P. and Little, Tom J. and Chaturvedi, Anurag and Pfrender, Michael E. and De Meester, Luc and Frilander, Mikko J.. (2016) Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. Scientific Data, 3. p. 160030.

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Pombert, Jean-François and Haag, Karen Luisa and Beidas, Shadi and Ebert, Dieter and Keeling, Patrick J.. (2015) The Ordospora colligata genome: Evolution of extreme reduction in microsporidia and host-to-parasite horizontal gene transfer. mBio, 6 (1). e02400-14.

Pulkkinen, K. and Suomalainen, L. -R. and Read, A. F. and Ebert, D. and Rintamäki, P. and Valtonen, E. T.. (2010) Intensive fish farming and the evolution of pathogen virulence : the case of columnaris disease in Finland. Proceedings of the Royal Society. Series B, Biological sciences, 2 (1681). pp. 593-600.

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Qi, W. and Nong, G. and Preston, J. F. and Ben-Ami, F. and Ebert, D.. (2009) Comparative metagenomics of Daphnia symbionts. BMC Genomics, Vol. 10 , 172.

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Rabajante, Jomar F. and Tubay, Jerrold M. and Ito, Hiromu and Uehara, Takashi and Kakishima, Satoshi and Morita, Satoru and Yoshimura, Jin and Ebert, Dieter. (2016) Host-parasite Red Queen dynamics with phase-locked rare genotypes. Science Advances, 2 (3). e1501548.

Retnaningdyah, C. and Ebert, D.. (2016) Bleach Solution Requirement for Hatching of Daphnia magna Resting Eggs. Journal of Tropical Life Science, 6. pp. 136-141.

Roulin, Anne C. and Bourgeois, Yann and Stiefel, Urs and Walser, Jean-Claude and Ebert, Dieter. (2016) A Photoreceptor Contributes to the Natural Variation of Diapause Induction in Daphnia magna. Molecular Biology and Evolution , 33 (12). pp. 3194-3204.

Roulin, Anne C. and Mariadassou, Mahendra and Hall, Matthew D. and Walser, Jean-Claude and Haag, Christoph and Ebert, Dieter. (2015) High genetic variation in resting-stage production in a metapopulation: Is there evidence for local adaptation? Evolution, 69 (10). pp. 2747-2756.

Rabajante, Jomar F. and Tubay, Jerrold M. and Uehara, Takashi and Morita, Satoru and Ebert, Dieter and Yoshimura, Jin. (2015) Red Queen dynamics in multi-host and multi-parasite interaction system. Scientific Reports, 5. p. 10004.

Roth, Tobias and Kohli, Lukas and Rihm, Beat and Amrhein, Valentin and Achermann, Beat. (2015) Nitrogen deposition and multi-dimensional plant diversity at the landscape scale. Royal Society open science, 2 (4). p. 150017.

Routtu, J. and Ebert, D.. (2015) Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites. Heredity, 114 (2). pp. 241-248.

Roth, Tobias and Strebel, Nicolas and Amrhein, Valentin. (2014) Estimating unbiased phenological trends by adapting site-occupancy models. Ecology, 95 (8). pp. 2144-2154.

Roth, Tobias and Plattner, Matthias and Amrhein, Valentin. (2014) Plants, birds and butterflies : short-term responses of species communities to climate warming vary by taxon and with altitude. PLoS one, Vol. 9, H. 1 , e82490.

Routtu, J. and Hall, M. D. and Albere, B. and Beisel, C. and Bergeron, R. D. and Chaturvedi, A. and Choi, J. H. and Colbourne, J. and De Meester, L. and Stephens, M. T. and Stelzer, C. P. and Solorzano, E. and Thomas, W. K. and Pfrender, M. E. and Ebert, D.. (2014) An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits. BMC genomics, Vol. 15 , 1033.

Roth, Tobias and Kohli, Lukas and Rihm, Beat and Achermann, Beat. (2013) Nitrogen deposition is negatively related to species richness and species composition of vascular plants and bryophytes in Swiss mountain grassland. Agriculture, ecosystems & environment, Vol. 178. pp. 121-126.

Roulin, Anne C. and Routtu, Jarkko and Hall, Matthew D. and Janicke, Tim and Colson, Isabelle and Haag, Christoph R. and Ebert, Dieter. (2013) Local adaptation of sex induction in a facultative sexual crustacean: insights from QTL mapping and natural populations of Daphnia magna. Molecular Ecology, 22 (13). pp. 3567-3579.

Refardt, D. and Ebert, D.. (2012) The impact of infection on host competition and its relationship to parasite persistence in a Daphnia-microparasite system. Evolutionary Ecology, 26 (1). pp. 95-107.

Routtu, J. and Jansen, B. and Colson, I. and De Meester, L. and Ebert, D.. (2010) The first-generation Daphnia magna linkage map. BMC genomics, Vol. 11 , 508.

Roth, T. and Sprau, P. and Schmidt, R. and Naguib, M. and Amrhein, V.. (2009) Sex-specific timing of mate searching and territory prospecting in the nightingale : nocturnal life of females. Proceedings of the Royal Society. Series B, Biological sciences, Vol. 276, H. 1664. pp. 2045-2050.

Rodrigues, J. L. M. and Duffy, M. A. and Tessier, A. J. and Ebert, D. and Mouton, L. and Schmidt, T. M.. (2008) Phylogenetic characterization and prevalence of Spirobacillus cienkowskii : a red-pigmented, spiral-shaped bacterial pathogen of the freshwater Cladoceran, Daphnia. Applied and Environmental Microbiology, 74 (5). pp. 1575-1582.

Roth, O. and Ebert, D. and Vizoso, D. B. and Bieger, A. and Lass, S.. (2008) Male-biased sex-ratio distortion caused by Octosporea bayeri, a vertically and horizontally-transmitted parasite of Daphnia magna. International Journal for Parasitology, 38 (8/9). pp. 969-979.

Roth, T. and Weber, D.. (2008) Top predators as indicators for species richness? : Prey species are just as useful. Journal of applied ecology, Vol. 45, no. 3, pp 987-991.

Roth, Tobias. (2008) Outward (autumn) bird migration at the Southeastern Peninsula and Cape Greco, Cyprus: the phenologies of regular migrants. Sandgrouse, Vol. 30, H. 1. p. 77.

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Schlotz, Nina and Roulin, Anne and Ebert, Dieter and Martin-Creuzburg, Dominik. (2016) Combined effects of dietary polyunsaturated fatty acids and parasite exposure on eicosanoid-related gene expression in an invertebrate model. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 201. pp. 115-123.

Stalling, Thomas and Aye, Raffael and Roth, Tobias. (2015) The first record of the White-breasted Waterhen, Amaurornis phoenicurus, in Iran (Aves: Rallidae). Zoology in the Middle East, 61 (2). pp. 184-185.

Sison-Mangus, M. P. and Mushegian, A. A. and Ebert, D.. (2015) Water fleas require microbiota for survival, growth and reproduction. ISME Journal, 9 (1). pp. 59-67.

Schweizer, Manuel and Ayé, Raffael and Kashkarov, Roman and Roth, Tobias. (2014) Conservation Action Based on Threatened Species Capture Taxonomic and Phylogenetic Richness in Breeding and Wintering Populations of Central Asian Birds. PLoS one, 9 (10). e110511.

Sattler, T. and Pezzatti, G. B. and Nobis, M. P. and Obrist, M. K. and Roth, T. and Moretti, M.. (2014) Selection of Multiple Umbrella Species for Functional and Taxonomic Diversity to Represent Urban Biodiversity. Conservation Biology, Vol. 28, no. 2. pp. 414-426.

Sheikh-Jabbari, E. and Hall, M. D. and Ben-Ami, F. and Ebert, D.. (2014) The expression of virulence for a mixed-mode transmitted parasite in a diapausing host. Parasitology, 141 (8). pp. 1097-1107.

Sandner, Peter. Impacts of sperm competition on mating behaviour and life history traits in a simultaneous hermaphrodite. 2013, Doctoral Thesis, University of Basel, Faculty of Science.

Schlotz, Nina and Ebert, Dieter and Martin-Creuzburg, Dominik. (2013) Dietary supply with polyunsaturated fatty acids and resulting maternal effects influence host -- parasite interactions. BMC ecology, Vol. 13 , 41.

Schmidt, L. M. and Mouton, L. and Nong, G. and Ebert, D. and Preston, J. F.. (2008) Genetic and immunological comparison of the cladoceran parasite Pasteuria ramosa with the nematode parasite Pasteuria penetrans. Applied and Environmental Microbiology, Vol. 74, H. 1. pp. 259-264.

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Theis, Anya and Bosia, Tania and Roth, Tobias and Salzburger, Walter and Egger, Bernd. (2015) Egg-spot pattern and body size asymmetries influence male aggression in haplochromine cichlid fishes. Behavioral Ecology, 26 (6). pp. 1512-1519.

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Yampolsky, Lev Y. and Schaer, Tobias M. M. and Ebert, Dieter. (2014) Adaptive phenotypic plasticity and local adaptation for temperature tolerance in freshwater zooplankton. Proceedings of the Royal Society. Series B, Biological Sciences, 281 (1776). p. 20132744.

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Zellweger, Florian and Braunisch, Veronika and Morsdorf, Felix and Baltensweiler, Andri and Abegg, Meinrad and Roth, Tobias and Bugmann, Harald and Bollmann, Kurt. (2015) Disentangling the effects of climate, topography, soil and vegetation on stand-scale species richness in temperate forests. Forest ecology and management, 349. pp. 36-44.

Zhang, C. and Du Pasquier, L. and Hsu, E.. (2013) Shark IgW C region diversificatin through RNA processing and isotype switching. Journal of immunology, Vol. 191, H. 6. pp. 3410-3418.

Zumbrunn, Thomas. Daphnia metacommunity dynamics : the roles of inbreeding, parasitism, competition, and dispersal. 2011, Doctoral Thesis, University of Basel, Faculty of Science.

Zbinden, M. and Haag, C. R. and Ebert, D.. (2008) Experimental evolution of field populations of Daphnia magna in response to parasite treatment. Journal of Evolutionary Biology, 21 (4). pp. 1068-1078.