Items where Division is "05 Faculty of Science > Departement Biozentrum > Infection Biology > Molecular Microbiology (Bumann)"

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Abu Kwaik, Yousef and Bumann, Dirk. (2015) Host delivery of favorite meals for intracellular pathogens. PLoS Pathogens, Vol. 11, H. 6 , e1004866.

Alain Mazé, and Timo Glatter, and Dirk Bumann, . (2014) The central metabolism regulator EIIAGlc switches Salmonella from growth arrest to acute virulence through activation of virulence factor secretion. Cell reports, Vol. 7, H. 5 , S. 1426–1433.

Aebischer, T. and Bumann, D. and Epple, H. J. and Metzger, W. and Schneider, T. and Cherepnev, G. and Walduck, A. K. and Kunkel, D. and Moos, V. and Loddenkemper, C. and Jiadze, I. and Panasyuk, M. and Stolte, M. and Graham, D. Y. and Zeitz, M. and Meyer, T. F.. (2008) Correlation of T cell response and bacterial clearance in human volunteers challenged with Helicobacter pylori revealed by randomised controlled vaccination with Ty21a-based Salmonella vaccines. Gut, 57 (8). pp. 1065-1072.

Arnold, H. and Bumann, D. and Felies, M. and Gewecke, B. and Sorensen, M. and Gessner, J. E. and Freihorst, J. and von Specht, B. U. and Baumann, U.. (2004) Enhanced immunogenicity in the murine airway mucosa with an attenuated Salmonella live vaccine expressing OprF-OprI from Pseudomonas aeruginosa. Infection and Immunity, 72 (11). pp. 6546-6553.

Aebischer, T. and Lucas, B. and Koesling, J. and Bumann, D. and Meyer, T. F.. (2000) How CD4(+) T cells may eliminate extracellular gastric Helicobacter? Journal of Biotechnology, 83 (1-2). pp. 77-84.

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Bumann, Dirk and Cunrath, Olivier. (2017) Heterogeneity of Salmonella-host interactions in infected host tissues. Current Opinion in Microbiology, 39. pp. 57-63.

Bumann, Dirk and Schothorst, Joep. (2017) Intracellular Salmonella metabolism. Cellular Microbiology, 19 (10). e12766.

Bumann, Dirk. (2015) Heterogeneous Host-Pathogen Encounters: Act Locally, Think Globally. Cell Host & Microbe, 17 (1). pp. 13-19.

Barat, Somedutta. Target identification for prevention and therapy of "Salmonella" infections. 2014, Doctoral Thesis, University of Basel, Faculty of Science.

Bumann, Dirk. (2014) Identification of protective antigens for vaccination against systemic salmonellosis. Frontiers in Immunology, 5 (381). pp. 1-5.

Burton, Neil A. and Schürmann, Nura and Casse, Olivier and Steeb, Anne K. and Claudi, Beatrice and Zankl, Janine and Schmidt, Alexander and Bumann, Dirk. (2014) Disparate Impact of Oxidative Host Defenses Determines the Fate of Salmonella during Systemic Infection in Mice. Cell Host & Microbe, 15 (1). pp. 72-83.

Barat, Somedutta and Steeb, Benjamin and Mazé, Alain and Bumann, Dirk. (2012) Extensive in vivo resilience of persistent Salmonella. PLoS one, Vol. 7, H. 7 , e42007.

Barat, Somedutta and Willer, Yvonne and Rizos, Konstantin and Claudi, Beatrice and Mazé, Alain and Schemmer, Anne K. and Kirchhoff, Dennis and Schmidt, Alexander and Burton, Neil and Bumann, Dirk. (2012) Immunity to intracellular Salmonella depends on surface-associated antigens. PLoS Pathogens, Vol. 8, H. 10 , e1002966.

Bumann, Dirk. (2010) Pathogen proteomes during infection : a basis for infection research and novel control strategies. Journal of Proteomics, 73 (11). pp. 2267-2276.

Bumann, D. and Behre, C. and Behre, K. and Herz, S. and Gewecke, B. and Gessner, J. E. and von Specht, B. U. and Baumann, U.. (2009) Systemic, nasal and oral live vaccines against Pseudomonas aeruginosa : a clinical trial of immunogenicity in lower airways of human volunteers. Vaccine, 28 (3). pp. 707-713.

Bumann, Dirk. (2009) System-level analysis of Salmonella metabolism during infection. Current Opinion in Microbiology, 12 (5). pp. 559-567.

Bumann, D.. (2008) Has nature already identified all useful antibacterial targets? Current Opinion in Microbiology, 11 (5). pp. 387-392.

Bumann, D. and Buss, L.. (2008) Nutritional physiology and colony form in Podocoryna carnea (Cnidaria: Hydrozoa). Invertebrate Biology, 127 (4). pp. 368-380.

Bumann, D. and Valdivia, R. H.. (2007) Identification of host-induced pathogen genes by differential fluorescence induction reporter systems. Nature Protocols, 2 (4). pp. 770-777.

Becker, D. and Selbach, M. and Rollenhagen, C. and Ballmaier, M. and Meyer, T. F. and Mann, M. and Bumann, D.. (2006) Robust Salmonella metabolism limits possibilities for new antimicrobials. Nature, 440 (7082). pp. 303-307.

Bumann, D. and Habibi, H. and Kan, B. and Schmid, M. and Goosmann, C. and Brinkmann, V. and Meyer, T. F. and Jungblut, P. R.. (2004) Lack of stage-specific proteins in coccoid Helicobacter pylori cells. Infection and Immunity, 72 (11). pp. 6738-6742.

Bumann, D. and Jungblut, P. R. and Meyer, T. F.. (2004) Helicobacter pylori vaccine development based on combined subproteome analysis. Proteomics, 4 (10). pp. 2843-2848.

Bumann, D.. (2003) T cell receptor-transgenic mouse models for studying cellular immune responses to Salmonella in vivo. FEMS Immunology and Medical Microbiology, 37 (2-3). pp. 105-109.

Bumann, D. and Jungblut, P. R. and Meyer, T. F.. (2003) Helicobacter vaccine development based on global approaches. Genome Letters, 2 (1-2). pp. 94-98.

Bumann, D.. (2002) Examination of Salmonella gene expression in an infected mammalian host using the green fluorescent protein and two-colour flow cytometry. Molecular Microbiology, 43 (5). pp. 1269-1283.

Bumann, D. and Aksu, S. and Wendland, M. and Janek, K. and Zimny-Arndt, U. and Sabarth, N. and Meyer, T. F. and Jungblut, P. R.. (2002) Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pylori. Infection and Immunity, 70 (7). pp. 3396-3403.

Bumann, D. and Holland, P. and Siejak, F. and Koesling, J. and Sabarth, N. and Lamer, S. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F.. (2002) A comparison of murine and human immunoproteomes of Helicobacter pylori validates the preclinical murine infection model for antigen screening. Infection and Immunity, 70 (11). pp. 6494-6498.

Bumann, D.. (2001) In vivo visualization of bacterial colonization, antigen expression, and specific T-cell induction following oral administration of live recombinant Salmonella enterica serovar Typhimurium. Infection and Immunity, 69 (7). pp. 4618-4626.

Bumann, D.. (2001) Regulated antigen expression in live recombinant Salmonella enterica serovar Typhimurium strongly affects colonization capabilities and specific CD4(+)-T-cell responses. Infection and Immunity, 69 (12). pp. 7493-7500.

Bumann, D. and Metzger, W. G. and Mansouri, E. and Palme, O. and Wendland, M. and Hurwitz, R. and Haas, G. and Aebischer, T. and von Specht, B. U. and Meyer, T. F.. (2001) Safety and immunogenicity of live recombinant Salmonella enterica serovar Typhi Ty21a expressing urease A and B from Helicobacter pylori in human volunteers. Vaccine, 20 (5-6). pp. 845-852.

Bumann, D. and Hueck, C. and Aebischer, T. and Meyer, T. F.. (2000) Recombinant live Salmonella spp. for human vaccination against heterologous pathogens. FEMS Immunology and Medical Microbiology, 27 (4). pp. 357-364.

Bumann, D. and Puls, G.. (1997) The ctenophore Mnemiopsis leidyi has a flow-through system for digestion with three consecutive phases of extracellular digestion. Physiological Zoology, 70 (1). pp. 1-6.

Bumann, D. and Oesterhelt, D.. (1995) Destruction of a single chlorophyll is correlated with the photoinhibition of photosystem II with a transiently inactive donor side. Proceedings of the National Academy of Sciences of the United States of America, 92 (26). pp. 12195-12199.

Bumann, D. and Oesterhelt, D.. (1994) Purification and characterization of oxygen-evolving photosystem II core complexes from the green alga Chlamydomonas reinhardtii. Biochemistry, 33 (36). pp. 10906-10910.

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Claudi, Beatrice and Spröte, Petra and Chirkova, Anna and Personnic, Nicolas and Zankl, Janine and Schürmann, Nura and Schmidt, Alexander and Bumann, Dirk. (2014) Phenotypic variation of salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell, 158 (4). pp. 722-733.

Crull, K. and Bumann, D. and Weiss, S.. (2011) Influence of infection route and virulence factors on colonization of solid tumors by Salmonella enterica serovar Typhimurium. FEMS Immunology and Medical Microbiology, 62 (1). pp. 75-83.

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de Buhr, M. F. and Hedrich, H. J. and Westendorf, A. M. and Obermeier, F. and Hofmann, C. and Zschemisch, N. H. and Buer, J. and Bumann, D. and Goyert, S. M. and Bleich, A.. (2009) Analysis of Cd14 as a genetic modifier of experimental inflammatory bowel disease (IBD) in mice. Inflammatory Bowel Diseases, 15 (12). pp. 1824-1836.

Daugelat, S. and Kowall, J. and Mattow, J. and Bumann, D. and Winter, R. and Hurwitz, R. and Kaufmann, S. H. E.. (2003) The RD1 proteins of Mycobacterium tuberculosis : expression in Mycobacterium smegmatis and biochemical characterization. Microbes and Infection, 5 (12). pp. 1082-1095.

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Freed, Nikki E. and Bumann, Dirk and Silander, Olin K.. (2016) Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. BMC Microbiology, 16 (1). p. 203.

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Gasser, Véronique and Baco, Etienne and Cunrath, Olivier and Saint August, Pamela and Perraud, Quentin and Zill, Nicolas and Schleberger, Christian and Schmidt, Alexander and Paulen, Aurélie and Bumann, Dirk and Mislin, Gaëtan L. A. and Schalk, Isabelle J.. (2016) Catechol siderophores repress the pyochelin pathway and activate the enterobactin pathway in Pseudomonas aeruginosa: an opportunity for siderophore-antibiotic conjugates development. Environmental Microbiology, 18 (3). pp. 819-832.

Gomez-Duarte, O. G. and Bumann, D. and Meyer, T. F.. (1999) The attenuated Salmonella vaccine approach for the control of Helicobacter pylori-related diseases. Vaccine, 17 (13-14). pp. 1667-1673.

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Hänisch, J. and Kolm, R. and Wozniczka, M. and Bumann, D. and Rottner, K. and Stradal, T. E. B.. (2011) Activation of a RhoA/Myosin II-Dependent but Arp2/3 Complex-Independent Pathway Facilitates Salmonella Invasion. Cell Host & Microbe, 9 (4). pp. 273-285.

Hänisch, J. and Ehinger, J. and Ladwein, M. and Rohde, M. and Derivery, E. and Bosse, T. and Steffen, A. and Bumann, D. and Misselwitz, B. and Hardt, W. D. and Gautreau, A. and Stradal, T. E. and Rottner, K.. (2009) Molecular dissection of Salmonella-induced membrane ruffling versus invasion. Cellular Microbiology, 12 (1). pp. 84-98.

Halle, S. and Bumann, D. and Herbrand, H. and Willer, Y. and Dahne, S. and Forster, R. and Pabst, O.. (2007) Solitary intestinal lymphoid tissue provides a productive port of entry for Salmonella enterica serovar Typhimurium. Infection and Immunity, 75 (4). pp. 1577-1585.

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Jungblut, Peter R. and Bumann, Dirk. (2002) Immunoproteome of Helicobacter pylori. Methods in Enzymology, 358. pp. 307-316.

Jungblut, P. R. and Bumann, D. and Haas, G. and Zimny-Arndt, U. and Holland, P. and Lamer, S. and Siejak, F. and Aebischer, A. and Meyer, T. F.. (2000) Comparative proteome analysis of Helicobacter pylori. Molecular Microbiology, 36 (3). pp. 710-725.

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Kentner, David and Martano, Giuseppe and Callon, Morgane and Chiquet, Petra and Brodmann, Maj and Burton, Olga and Wahlander, Asa and Nanni, Paolo and Delmotte, Nathanaël and Grossmann, Jonas and Limenitakis, Julien and Schlapbach, Ralph and Kiefer, Patrick and Vorholt, Julia A. and Hiller, Sebastian and Bumann, Dirk. (2014) Shigella reroutes host cell central metabolism to obtain high-flux nutrient supply for vigorous intracellular growth. Proceedings of the National Academy of Sciences of the United States of America, 111 (27). pp. 9929-9934.

Kwaik, Yousef Abu and Bumann, Dirk. (2013) Microbial quest for food in vivo : "Nutritional virulence" as an emerging paradigm. Cellular Microbiology, 15 (6). pp. 882-890.

Kirchhoff, D. and Frentsch, M. and Leclerk, P. and Bumann, D. and Rausch, S. and Hartmann, S. and Thiel, A. and Scheffold, A.. (2007) Identification and isolation of murine antigen-reactive T cells according to CD154 expression. European Journal of Immunology, 37 (9). pp. 2370-2377.

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Leschner, Sara and Deyneko, Igor V. and Lienenklaus, Stefan and Wolf, Kathrin and Bloecker, Helmut and Bumann, Dirk and Loessner, Holger and Weiss, Siegfried. (2012) Identification of tumor-specific Salmonella Typhimurium promoters and their regulatory logic. Nucleic Acids Research, 40 (7). pp. 2984-2994.

Lucas, B. and Bumann, D. and Walduck, A. and Koesling, J. and Develioglu, L. and Meyer, T. F. and Aebischer, T.. (2001) Adoptive transfer of CD4+ T cells specific for subunit A of Helicobacter pylori urease reduces H. pylori stomach colonization in mice in the absence of interleukin-4 (IL-4)/IL-13 receptor signaling. Infection and Immunity, 69 (3). pp. 1714-1721.

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Martano, Giuseppe and Delmotte, Nathanaël and Kiefer, Patrick and Christen, Philipp and Kentner, David and Bumann, Dirk and Vorholt, Julia A.. (2015) Fast sampling method for mammalian cell metabolic analyses using liquid chromatography-mass spectrometry. Nature Protocols, 10 (1). pp. 1-11.

McEwan, David G. and Richter, Benjamin and Claudi, Beatrice and Wigge, Christoph and Wild, Philipp and Farhan, Hesso and McGourty, Kieran and Coxon, Fraser P. and Franz-Wachtel, Mirita and Perdu, Bram and Akutsu, Masato and Habermann, Anja and Kirchof, Anja and Helfrich, Miep H. and Odgren, Paul R. and Van Hul, Wim and Frangakis, Achilleas S. and Rajalingam, Krishnaraj and Macek, Boris and Holden, David W. and Bumann, Dirk and Dikic, Ivan. (2015) PLEKHM1 Regulates Salmonella-Containing Vacuole Biogenesis and Infection. Cell Host & Microbe, 17 (1). pp. 58-71.

Makowska, Zuzanna. Interferon signalling in the liver : implications for the natural course and therapy of hepatitis C. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Mary, Camille and Duek, Paula and Salleron, Lisa and Tienz, Petra and Bumann, Dirk and Bairoch, Amos and Lane, Lydie. (2012) Functional Identification of APIP as Human mtnB, a Key Enzyme in the Methionine Salvage Pathway. PLoS One, 7 (12). e52877.

Metzger, W. G. and Mansouri, E. and Kronawitter, M. and Diescher, S. and Soerensen, M. and Hurwitz, R. and Bumann, D. and Aebischer, T. and Von Specht, B. -U. and Meyer, T. F.. (2004) Impact of vector-priming on the immunogenicity of a live recombinant Salmonella enterica serovar typhi Ty21a vaccine expressing urease A and B from Helicobacter pylori in human volunteers. Vaccine, 22 (17-18). pp. 2273-2277.

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Pawelczyk, S. and Bumann, D. and Abraham, W. R.. (2011) Kinetics of carbon sharing in a bacterial consortium revealed by combining stable isotope probing with fluorescence-activated cell sorting. Journal of Applied Microbiology, 110 (4). pp. 1065-1073.

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Rollenhagen, C. and Bumann, D.. (2006) Salmonella enterica highly expressed genes are disease specific. Infection and Immunity, 74 (3). pp. 1649-1660.

Rollenhagen, C. and Sorensen, M. and Rizos, K. and Hurvitz, R. and Bumann, D.. (2004) Antigen selection based on expression levels during infection facilitates vaccine development for an intracellular pathogen. Proceedings of the National Academy of Sciences of the United States of America, 101 (23). pp. 8739-8744.

Rizos, K. and Lattemann, C. T. and Bumann, D. and Meyer, T. F. and Aebischer, T.. (2003) Autodisplay : efficacious surface exposure of antigenic UreA fragments from Helicobacter pylori in Salmonella vaccine strains. Infection and Immunity, 71 (11). pp. 6320-6328.

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Schürmann, Nura and Forrer, Pascal and Casse, Olivier and Li, Jiagui and Felmy, Boas and Burgener, Anne-Valérie and Ehrenfeuchter, Nikolaus and Hardt, Wolf-Dietrich and Recher, Mike and Hess, Christoph and Tschan-Plessl, Astrid and Khanna, Nina and Bumann, Dirk. (2017) Myeloperoxidase targets oxidative host attacks to Salmonella and prevents collateral tissue damage. Nature Microbiology, 2. p. 16268.

Schürmann, Nura. Heterogeneous Salmonella-host encounters determine disease progression in a typhoid fever model. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Steeb, Benjamin and Claudi, Beatrice and Burton, Neil A. and Tienz, Petra and Schmidt, Alexander and Farhan, Hesso and Mazé, Alain and Bumann, Dirk. (2013) Parallel exploitation of diverse host nutrients enhances salmonella virulence. PLoS Pathogens, Vol. 9, H. 4 , e1003301.

Schemmer, Anne Kathrin. Heterogeneity of inflammation and host metabolism in a typhoid fever model. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Schrimpf, Sabine P. and von Mering, Christian and Bendixen, Emøke and Heazlewood, Joshua L. and Bumann, Dirk and Omenn, Gil and Hengartner, Michael O.. (2012) The initiative on Model Organism Proteomes (iMOP) Session September 6, 2011, Geneva, Switzerland. Proteomics, 12 (3). pp. 346-350.

Steeb, Benjamin. A quantitative analysis of Salmonella Typhimurium metabolism during infection. 2012, Doctoral Thesis, University of Basel, Faculty of Science.

Stelter, C. and Kappeli, R. and Konig, C. and Krah, A. and Hardt, W. -D. and Stecher, B. and Bumann, D.. (2011) Salmonella-Induced Mucosal Lectin RegIIIbeta Kills Competing Gut Microbiota. PLoS One, 6 (6). e20749.

Sabarth, N. and Hurvitz, R. and Schmidt, M. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F. and Bumann, D.. (2005) Identification of Helicobacter pylori surface proteins by selective proteinase K digestion and antibody phage display. Journal of Microbiological Methods, 62 (3). pp. 345-349.

Sorensen, M. and Lippuner, C. and Kaiser, T. and Misslitz, A. and Aebischer, T. and Bumann, D.. (2003) Rapidly maturing red fluorescent protein variants with strongly enhanced brightness in bacteria. FEBS Letters, 552 (2-3). pp. 110-114.

Sabarth, N. and Hurwitz, R. and Meyer, T. F. and Bumann, D.. (2002) Multiparameter selection of Helicobacter pylori antigens identifies two novel antigens with high protective efficacy. Infection and Immunity, 70 (11). pp. 6499-6503.

Sabarth, N. and Lamer, S. and Zimny-Arndt, U. and Jungblut, P. R. and Meyer, T. F. and Bumann, D.. (2002) Identification of surface proteins of Helicobacter pylori by selective biotinylation, affinity purification, and two-dimensional gel electrophoresis. Journal of Biological Chemistry, 277 (31). pp. 27896-27902.

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Trebosc, Vincent. Adjuvant drug therapy to overcome antibiotic resistances : drug target evaluation in multidrug resistant pathogens. 2017, Doctoral Thesis, University of Basel, Faculty of Science.

Trebosc, Vincent and Gartenmann, Sarah and Royet, Kevin and Manfredi, Pablo and Tötzl, Marcus and Schellhorn, Birgit and Pieren, Michel and Tigges, Marcel and Lociuro, Sergio and Sennhenn, Peter C. and Gitzinger, Marc and Bumann, Dirk and Kemmer, Christian. (2016) A novel genome editing platform for drug resistant Acinetobacter baumannii revealed an AdeR-unrelated tigecycline resistance mechanism. Antimicrobial Agents and Chemotherapy, 60 (12). pp. 7263-7271.

Thiele, I. and Hyduke, D. R. and Steeb, B. and Fankam, G. and Allen, D. K. and Bazzani, S. and Charusanti, P. and Chen, F. -C. and Fleming, R. M. T. and Hsiung, C. A. and De Keersmaecker, S. C. J. and Liao, Y. -C. and Marchal, K. and Mo, M. L. and Ozdemir, E. and Raghunathan, A. and Reed, J. L. and Shin, S. -il and Sigurbjornsdottir, S. and Steinmann, J. and Sudarsan, S. and Swainston, N. and Thijs, I. M. and Zengler, K. and Palsson, B. O. and Adkins, J. N. and Bumann, D.. (2011) A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2. BMC Systems Biology, 5 (8). pp. 1-9.

Thone, F. and Schwanhausser, B. and Becker, D. and Ballmaier, M. and Bumann, D.. (2007) FACS-isolation of Salmonella-infected cells with defined bacterial load from mouse spleen. Journal of Microbiological Methods, 71 (3). pp. 220-224.

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Willer, Yvonne and Müller, Beatrice and Bumann, Dirk. (2012) Intestinal inflammation responds to microbial tissue load independent of pathogen/non-pathogen discrimination. PloS one, Vol. 7, H. 5 , e35992.

Wild, P. and Farhan, H. and McEwan, D. G. and Wagner, S. and Rogov, V. V. and Brady, N. R. and Richter, B. and Korac, J. and Waidmann, O. and Choudhary, C. and Dötsch, V. and Bumann, D. and Dikic, I.. (2011) Phosphorylation of the Autophagy Receptor Optineurin Restricts Salmonella Growth. Science, 333 (6039). pp. 228-233.

Wendland, M. and Bumann, D.. (2002) Optimization of GFP levels for analyzing Salmonella gene expression during an infection. FEBS Letters, 521 (1-3). pp. 105-108.