Items where Division is "05 Faculty of Science > Departement Biozentrum > Computational & Systems Biology > Synthetic Microbiology (Becskei)"

2017

Baudrimont, Antoine and Voegeli, Sylvia and Viloria, Eduardo Calero and Stritt, Fabian and Lenon, Marine and Wada, Takeo and Jaquet, Vincent and Becskei, Attila. (2017) Multiplexed gene control reveals rapid mRNA turnover. Science Advances, 3 (7). e1700006.

Gencoglu, Mumun and Schmidt, Alexander and Becskei, Attila. (2017) Measurement of in vivo protein binding affinities in a signaling network with mass spectrometry. ACS Synthetic Biology, 6 (7). pp. 1305-1314.

Jaquet, Vincent and Hsu, Chieh and Becskei, Attila. (2017) Measurement of bistability in a multidimensional parameter space. Integrative Biology, 9 (2). pp. 167-177.

Maleki, Farzaneh and Becskei, Attila. (2017) An open-loop approach to calculate noise-induced transitions. Journal of Theoretical Biology. pp. 1-13.

Wada, Takeo and Becskei, Attila. (2017) Impact of Methods on the Measurement of mRNA Turnover. International Journal of Molecular Sciences, 18 (12). p. 12.

9 October 2016

Hsu, Chieh and Jaquet, Vincent and Maleki, Farzaneh and Becskei, Attila. (2016) Contribution of bistability and noise to cell fate transitions determined by feedback opening. Journal of Molecular Biology, 428 (20). pp. 4115-4128.

2016

Hsu, Chieh and Jaquet, Vincent and Gencoglu, Mumun and Becskei, Attila. (2016) Protein Dimerization Generates Bistability in Positive Feedback Loops. Cell Reports , 16 (5). pp. 1204-1210.

Jaquet, Vincent. Characterization of bistability and transition rates in transcriptional positive feedback loops. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

Maleki, Farzaneh. An open-loop approach to study the stochastic properties. 2016, Doctoral Thesis, University of Basel, Faculty of Science.

December 2015

Májer, Imre and Hajihosseini, Amirhossein and Becskei, Attila. (2015) Identification of optimal parameter combinations for the emergence of bistability. Physical biology, 12 (6). 066011.

5 November 2015

Baudrimont, Antoine and Becskei, Attila. (2015) Gene regulation: Expression feels two pulses. Nature, 527 (7576). pp. 46-47.

2015

Gençoğlu, Mümün. Quantification of macromolecular interactions in GAL network. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

Hajihosseini, Amirhossein. Exploring robustness of bistability in prototypical positive feedback loops. 2015, Doctoral Thesis, University of Basel, Faculty of Science.

2014

Bonde, Marie Mi and Voegeli, Sylvia and Baudrimont, Antoine and Séraphin, Bertrand and Becskei, Attila. (2014) Quantification of pre-mRNA escape rate and synergy in splicing. Nucleic acids research, Vol. 42, H. 20. pp. 12847-12860.

2013

Stölting, Meline Nogueira Lucena and Ferrari, Stefano and Handschin, Christoph and Becskei, Attila and Provenzano, Maurizio and Sulser, Tullio and Eberli, Daniel. (2013) Myoblasts inhibit prostate cancer growth by paracrine secretion of tumor necrosis factor-α. Journal of Urology, 189 (5). pp. 1952-1959.

2012

Hsu, Chieh and Scherrer, Simone and Buetti-Dinh, Antoine and Ratna, Prasuna and Pizzolato, Julia and Jaquet, Vincent and Becskei, Attila. (2012) Stochastic signalling rewires the interaction map of a multiple feedback network during yeast evolution. Nature communications, Vol. 3 , 682.

2011

Becskei, Attila and Scherrer, Simone and Kelemen, Janos Z. and Murray, Ann Ehrenhofer. (2011) Modeling of chromosomal epigenetic silencing processes. Transcription, 2 (4). pp. 173-178.

Ratna, Prasuna and Becskei, Attila. (2011) Construction of cis-regulatory input functions of yeast promoters. Methods in Molecular Biology, 734. pp. 45-61.

2010

Kelemen, János Z. and Ratna, Prasuna and Scherrer, Simone and Becskei, Attila. (2010) Spatial epigenetic control of mono- and bistable gene expression. PLoS Biology, 8 (3). e1000332.

Sun, Li and Becskei, Attila. (2010) Systems biology: The cost of feedback control. Nature, 467 (7312). pp. 163-164.

2009

Becskei, Attila. (2009) Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5. p. 255.

Buetti-Dinh, Antoine and Ungricht, Rosemarie and Kelemen, János Z. and Shetty, Chetak and Ratna, Prasuna and Becskei, Attila. (2009) Control and signal processing by transcriptional interference. Molecular Systems Biology, 5. p. 300.

Byun, Reine and Becskei, Attila. (2009) Biology inspires engineering. Genome Biology, 10 (11). p. 317.

Ratna, Prasuna and Scherrer, Simone and Fleischli, Christoph and Becskei, Attila. (2009) Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387 (4). pp. 826-839.

2007

Becskei, Attila and Grusby, Michael J.. (2007) Contribution of IL-12R mediated feedback loop to Th1 cell differentiation. FEBS Letters, 581 (27). pp. 5199-5206.

2005

Acar, Murat and Becskei, Attila and van Oudenaarden, Alexander. (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature, 435 (7039). pp. 228-232.

Becskei, Attila and Kaufmann, Benjamin B. and van Oudenaarden, Alexander. (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nature Genetics, 37 (9). pp. 937-944.

Becskei, Attila and Mattaj, Iain W.. (2005) Quantitative models of nuclear transport. Current Opinion in Cell Biology, 17 (1). pp. 27-34.

Ozbudak, Ertugrul M. and Becskei, Attila and van Oudenaarden, Alexander. (2005) A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization. Developmental Cell, 9 (4). pp. 565-571.

2004

Becskei, Attila and Boselli, Monica G. and van Oudenaarden, Alexander. (2004) Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology , 6 (5). pp. 451-457.

2003

Becskei, Attila and Mattaj, Iain W.. (2003) The strategy for coupling the RanGTP gradient to nuclear protein export. Proceedings of the National Academy of Sciences of the United States of America, 100 (4). pp. 1717-1722.

2002

Louis, Matthieu and Becskei, Attila. (2002) Binary and graded responses in gene networks. Science Signaling, 2002 (143). e33.

2001

Becskei, A. and Séraphin, B. and Serrano, L.. (2001) Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. The EMBO Journal, 20 (10). pp. 2528-2535.

2000

Becskei, A. and Serrano, L.. (2000) Engineering stability in gene networks by autoregulation. Nature, 405 (6786). pp. 590-593.

1998

Jancsó, G. and Domoki, F. and Sántha, P. and Varga, J. and Fischer, J. and Orosz, K. and Penke, B. and Becskei, Attila and Dux, M. and Tóth, L.. (1998) Beta-amyloid (1-42) peptide impairs blood-brain barrier function after intracarotid infusion in rats. Neuroscience Letters, 253 (2). pp. 139-141.